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The map label for this gene is yjgF [C]

Identifier: 29144202

GI number: 29144202

Start: 4070233

End: 4070613

Strand: Reverse

Name: yjgF [C]

Synonym: t3932

Alternate gene names: 29144202

Gene position: 4070613-4070233 (Counterclockwise)

Preceding gene: 29144203

Following gene: 29144201

Centisome position: 84.95

GC content: 43.57

Gene sequence:

>381_bases
GTGAAAGAGATTATTTTTACAGAAACAGCACCGGCAGCAATTGGCTCATACAGTCAGGGCAATGCGATGGGTAATTTAAT
TTTTACCTCCGGACAATTGCCCATTAACGCTGACAGTGGCAAAATTGAAACTGATGATATTCAGGAACAGACCCGTCAGT
CACTGCTTAATCTTCTGGCTGTAGTTAAGATGGCAGGCGGTGATACTGATACGGTACTGAAAACGACCTGTTTCTTGAGT
GATATGGCTGATTTTGCTGCGTTCAACGATGTCTATGCCAGCTTTTTTAAGATAAATCCGCCGGCACGCAGCTGTTTTGC
TGTAAAAACACTTCCTATGGGTGCCAGAGTTGAGATTGAAGCTGTGGCATTTCGTCAATAA

Upstream 100 bases:

>100_bases
CGGATTTGCCCGAATTAACTGTGGTGTTCCGGAGTCACGTATTGATGAAGCACTGAGTCGTCTGGAAAAGGCATTCAGTA
AGTATTTTTAAGGAACAGAA

Downstream 100 bases:

>100_bases
CAAAGGTGGTTGCCACTGAGGTGGCAACCAGATTAACCATGAAAAACACTTGTCTTGAACCCTATGAATTTTTGATCGAT
TTCCTGGCCGATTATTTTGG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKEIIFTETAPAAIGSYSQGNAMGNLIFTSGQLPINADSGKIETDDIQEQTRQSLLNLLAVVKMAGGDTDTVLKTTCFLS
DMADFAAFNDVYASFFKINPPARSCFAVKTLPMGARVEIEAVAFRQ

Sequences:

>Translated_126_residues
MKEIIFTETAPAAIGSYSQGNAMGNLIFTSGQLPINADSGKIETDDIQEQTRQSLLNLLAVVKMAGGDTDTVLKTTCFLS
DMADFAAFNDVYASFFKINPPARSCFAVKTLPMGARVEIEAVAFRQ
>Mature_126_residues
MKEIIFTETAPAAIGSYSQGNAMGNLIFTSGQLPINADSGKIETDDIQEQTRQSLLNLLAVVKMAGGDTDTVLKTTCFLS
DMADFAAFNDVYASFFKINPPARSCFAVKTLPMGARVEIEAVAFRQ

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=40.8, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=46.5116279069767, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=45.3125, Blast_Score=114, Evalue=2e-27,
Organism=Escherichia coli, GI1787245, Length=122, Percent_Identity=29.5081967213115, Blast_Score=66, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=47.9674796747967, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=47.9674796747967, Blast_Score=114, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=47.9674796747967, Blast_Score=113, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=122, Percent_Identity=35.2459016393443, Blast_Score=93, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=41.5841584158416, Blast_Score=88, Evalue=3e-19,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=39.5161290322581, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13592; Mature: 13592

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIIFTETAPAAIGSYSQGNAMGNLIFTSGQLPINADSGKIETDDIQEQTRQSLLNLLA
CCCEEECCCCCHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
VVKMAGGDTDTVLKTTCFLSDMADFAAFNDVYASFFKINPPARSCFAVKTLPMGARVEIE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCEEEE
AVAFRQ
EEEECC
>Mature Secondary Structure
MKEIIFTETAPAAIGSYSQGNAMGNLIFTSGQLPINADSGKIETDDIQEQTRQSLLNLLA
CCCEEECCCCCHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
VVKMAGGDTDTVLKTTCFLSDMADFAAFNDVYASFFKINPPARSCFAVKTLPMGARVEIE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCEEEE
AVAFRQ
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]