| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
Click here to switch to the map view.
The map label for this gene is dppD [H]
Identifier: 29144162
GI number: 29144162
Start: 4015530
End: 4016513
Strand: Direct
Name: dppD [H]
Synonym: t3888
Alternate gene names: 29144162
Gene position: 4015530-4016513 (Clockwise)
Preceding gene: 29144161
Following gene: 29144163
Centisome position: 83.8
GC content: 56.0
Gene sequence:
>984_bases ATGGCGTTATTAAATGTAGATCAATTATCGGTGCACTTCGGCGACGAAGGGACACCGTTCAAAGCCGTCGACCGCATTAG CTACAGCGTGAAGCAGGGTGAGGTGGTCGGTATTGTCGGCGAGTCTGGTTCCGGCAAATCCGTCAGCTCGCTGGCGATTA TGGGGCTTATCGATTACCCAGGCCGCGTGATGGCGGAAAACCTGCTCTTTAACGGACAGGATCTGAAGCGCATTTCCGAG AAGGAACGTCGCAACCTGGTGGGCGCTGAAGTGGCGATGATTTTCCAGGACCCGATGACCAGCCTCAATCCTTGCTATAC CGTTGGCTTTCAGATTATGGAAGCCATCAAGGTACATCAGGGCGGGAACAAGAAAACCCGTCGTCAGCGAGCGATTGACC TGTTGAACCAGGTGGGTATTCCCGATCCGGCTTCTCGTCTGGATGTCTATCCGCACCAGCTTTCTGGCGGCATGAGTCAG CGCGTGATGATTGCGATGGCCATAGCCTGTCGACCAAAGCTGTTAATTGCTGATGAACCGACCACGGCGCTGGATGTGAC CATTCAGGCGCAAATCATTGAGCTGCTGCTGGAGTTGCAGCAAAAAGAGAACATGGCGCTGGTGCTGATTACCCATGACT TGGCGCTGGTGGCGGAAGCGGCGCACAAAATTATCGTCATGTACGCCGGGCAGGTCGTCGAAACCGGCGCTGCGCAGGAT ATTTTCCGCGCGCCGCGTCATCCGTATACCCAGGCATTGCTACGTGCGTTACCAGAGTTTGCGCAAGATAAAGCGCGTCT GGCGTCGCTGCCGGGCGTGGTGCCGGGGAAATATGACCGACCGACGGGTTGTCTGCTTAACCCTCGCTGCCCCCACGCCA CGGACAGATGTCGTGCGGAAGAACCTGCTCTCAACCAACTGGACGATGGACGTCAGTCAAAATGTCATTACCCACTCGAT GATGCCGGGAGGCCCACACTATGA
Upstream 100 bases:
>100_bases CCGGGGCTGGCGATTCTGCTGACGGTACTGGCATTTAACCTGATGGGTGACGGTCTGCGTGACGCGCTCGATCCCAAACT GAAGCAGTAAGAGGTTCGAG
Downstream 100 bases:
>100_bases GTACGCATGAGGCCACCTTGCAACAGCCGCTGTTGCGGGCTATCGACCTGAAAAAACACTATCCGGTGAAGAAGGGGATC TTTTCTCCGGAACGGCTGGT
Product: dipeptide transporter ATP-binding subunit
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MALLNVDQLSVHFGDEGTPFKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAENLLFNGQDLKRISE KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGAAQD IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPTGCLLNPRCPHATDRCRAEEPALNQLDDGRQSKCHYPLD DAGRPTL
Sequences:
>Translated_327_residues MALLNVDQLSVHFGDEGTPFKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAENLLFNGQDLKRISE KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGAAQD IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPTGCLLNPRCPHATDRCRAEEPALNQLDDGRQSKCHYPLD DAGRPTL >Mature_326_residues ALLNVDQLSVHFGDEGTPFKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAENLLFNGQDLKRISEK ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGAAQDI FRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPTGCLLNPRCPHATDRCRAEEPALNQLDDGRQSKCHYPLDD AGRPTL
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9665248, Length=220, Percent_Identity=30, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI148612844, Length=226, Percent_Identity=28.3185840707965, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=226, Percent_Identity=28.3185840707965, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9961252, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI21536378, Length=230, Percent_Identity=29.5652173913043, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI42490749, Length=254, Percent_Identity=27.9527559055118, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789963, Length=327, Percent_Identity=94.8012232415902, Blast_Score=635, Evalue=0.0, Organism=Escherichia coli, GI48994883, Length=320, Percent_Identity=45.9375, Blast_Score=297, Evalue=5e-82, Organism=Escherichia coli, GI1787548, Length=330, Percent_Identity=44.2424242424242, Blast_Score=269, Evalue=2e-73, Organism=Escherichia coli, GI145693107, Length=268, Percent_Identity=49.6268656716418, Blast_Score=260, Evalue=8e-71, Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=42.4528301886792, Blast_Score=260, Evalue=9e-71, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=46.5116279069767, Blast_Score=234, Evalue=5e-63, Organism=Escherichia coli, GI1787500, Length=319, Percent_Identity=37.3040752351097, Blast_Score=204, Evalue=6e-54, Organism=Escherichia coli, GI1789962, Length=306, Percent_Identity=36.2745098039216, Blast_Score=197, Evalue=7e-52, Organism=Escherichia coli, GI1787758, Length=309, Percent_Identity=36.2459546925566, Blast_Score=191, Evalue=8e-50, Organism=Escherichia coli, GI48994997, Length=256, Percent_Identity=36.71875, Blast_Score=148, Evalue=5e-37, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=36.3247863247863, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=32.5670498084291, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1789891, Length=240, Percent_Identity=37.0833333333333, Blast_Score=137, Evalue=7e-34, Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=35.0649350649351, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1787029, Length=253, Percent_Identity=32.0158102766798, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI1786398, Length=265, Percent_Identity=30.188679245283, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=35.042735042735, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI87081834, Length=224, Percent_Identity=32.5892857142857, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=30.3149606299213, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=36.1233480176211, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1786703, Length=196, Percent_Identity=37.7551020408163, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787712, Length=251, Percent_Identity=29.4820717131474, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788644, Length=199, Percent_Identity=30.6532663316583, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1790162, Length=266, Percent_Identity=27.8195488721804, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=29.3859649122807, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87081791, Length=265, Percent_Identity=29.4339622641509, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=27.6859504132231, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1787105, Length=280, Percent_Identity=30, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87081709, Length=236, Percent_Identity=25.4237288135593, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=30.0925925925926, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786563, Length=233, Percent_Identity=30.9012875536481, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=29.6803652968037, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=26.0683760683761, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI48994943, Length=235, Percent_Identity=27.2340425531915, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790467, Length=232, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1786803, Length=250, Percent_Identity=26, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=28.6995515695067, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=27.2321428571429, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI87082267, Length=231, Percent_Identity=25.974025974026, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1786253, Length=223, Percent_Identity=28.2511210762332, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=25.1141552511416, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1786319, Length=229, Percent_Identity=27.9475982532751, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI48995001, Length=220, Percent_Identity=28.6363636363636, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786698, Length=218, Percent_Identity=27.9816513761468, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87081782, Length=241, Percent_Identity=26.9709543568465, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787143, Length=252, Percent_Identity=30.5555555555556, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788002, Length=230, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1788053, Length=194, Percent_Identity=27.319587628866, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789586, Length=220, Percent_Identity=27.7272727272727, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=26.5217391304348, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1790190, Length=241, Percent_Identity=25.7261410788382, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193209708, Length=233, Percent_Identity=29.1845493562232, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI212646699, Length=224, Percent_Identity=29.4642857142857, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25146777, Length=233, Percent_Identity=28.755364806867, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI193202349, Length=225, Percent_Identity=28.4444444444444, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17558664, Length=226, Percent_Identity=31.4159292035398, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115534520, Length=223, Percent_Identity=28.2511210762332, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71984940, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569143, Length=225, Percent_Identity=29.7777777777778, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567269, Length=237, Percent_Identity=27.8481012658228, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17552232, Length=250, Percent_Identity=27.6, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6324985, Length=236, Percent_Identity=27.1186440677966, Blast_Score=72, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6323217, Length=230, Percent_Identity=28.695652173913, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322980, Length=252, Percent_Identity=26.984126984127, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6319856, Length=231, Percent_Identity=26.4069264069264, Blast_Score=63, Evalue=6e-11, Organism=Drosophila melanogaster, GI24641565, Length=219, Percent_Identity=32.4200913242009, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28574744, Length=232, Percent_Identity=27.1551724137931, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574150, Length=224, Percent_Identity=23.6607142857143, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007328, Length=224, Percent_Identity=23.6607142857143, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35782; Mature: 35651
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLNVDQLSVHFGDEGTPFKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP CCEECCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHEEEEEHCCCC GRVMAENLLFNGQDLKRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGAAQD CCEEEEEHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHEEEEECCHHHHCCCHHH IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPTGCLLNPRCPHATDRCRAE HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHCCC EPALNQLDDGRQSKCHYPLDDAGRPTL CCCHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ALLNVDQLSVHFGDEGTPFKAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP CEECCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHEEEEEHCCCC GRVMAENLLFNGQDLKRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGAAQD CCEEEEEHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHEEEEECCHHHHCCCHHH IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPTGCLLNPRCPHATDRCRAE HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHCCC EPALNQLDDGRQSKCHYPLDDAGRPTL CCCHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]