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The map label for this gene is yhjY [H]

Identifier: 29144154

GI number: 29144154

Start: 4004727

End: 4005431

Strand: Direct

Name: yhjY [H]

Synonym: t3878

Alternate gene names: 29144154

Gene position: 4004727-4005431 (Clockwise)

Preceding gene: 29144151

Following gene: 29144155

Centisome position: 83.57

GC content: 54.61

Gene sequence:

>705_bases
ATGATTGTAAGAAAACGCCGTGGTCGCCGGACATTGCGTTGTCTGGCGGGCCTTATGGCCTGCTCGTTTTTTATCAATAC
CACGTATGCCTGGCAACAAGAATATATCGCTGAAGCGGCTCCGGGGCATACGACGGAACGCTATACCTGGGACAGCGATC
ACCAACCGAATTACAACGACATACTGGCCGAACGTATTCAGTCTACGCAAAATACGGTGGGTCCGGTGCTTAGCCTGGCG
GATGAAACCCCGCTTGATGCGACCAGCGGTATCAGTATGGGCTGGAATTTTTCGCTTTCCCGACGCGTAACCACTGGGCC
GGTCGCGGCGCTGCATTACGACGGTTCGACGTCATCAATGTATAACGAATATGGCGATAGCGCGACGACATTAGCGCTTA
CCGATCCGTTATGGCATGCCAGCGTCAGTACGTTAGGCTGGCGGGTAAACTCGCAGTTCGGCGATGTCCGTCCCTGGGCG
CAGATCAGCTATAACCAACAGTTTGGGGAAAATATCTGGAAAGCGCAGTCCGGGTTGAGTCGTATGACCGCAGGAAATCA
GGCGGGAAACTGGCTGGATGTCACCGTAGGCGCGGACGTGTTACTTAACCCGCACCTGGCGGCGTATGCGGCGTTTTCTC
AGGCGGAAAACAGCGCTACGGATAGCGATTATTTGTATACCCTGGGGGTGAGCGCCAGGTTTTAA

Upstream 100 bases:

>100_bases
TCCGCTAAAAGGACAATAGTTAATACAGGGCTGATGTCCGACATCCTTCATTCAATGACAATAATATCGCCGAATTCGGC
TCTACTCTGGAGTCGCGTTG

Downstream 100 bases:

>100_bases
CGGGATAAACCGTCGCCTGGACTTATTAGAAGTTCAGCTAATACCCTATCTATATATTTACAAAAATATATAGGTCAATC
ACATTCTCTATAGACACTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIVRKRRGRRTLRCLAGLMACSFFINTTYAWQQEYIAEAAPGHTTERYTWDSDHQPNYNDILAERIQSTQNTVGPVLSLA
DETPLDATSGISMGWNFSLSRRVTTGPVAALHYDGSTSSMYNEYGDSATTLALTDPLWHASVSTLGWRVNSQFGDVRPWA
QISYNQQFGENIWKAQSGLSRMTAGNQAGNWLDVTVGADVLLNPHLAAYAAFSQAENSATDSDYLYTLGVSARF

Sequences:

>Translated_234_residues
MIVRKRRGRRTLRCLAGLMACSFFINTTYAWQQEYIAEAAPGHTTERYTWDSDHQPNYNDILAERIQSTQNTVGPVLSLA
DETPLDATSGISMGWNFSLSRRVTTGPVAALHYDGSTSSMYNEYGDSATTLALTDPLWHASVSTLGWRVNSQFGDVRPWA
QISYNQQFGENIWKAQSGLSRMTAGNQAGNWLDVTVGADVLLNPHLAAYAAFSQAENSATDSDYLYTLGVSARF
>Mature_234_residues
MIVRKRRGRRTLRCLAGLMACSFFINTTYAWQQEYIAEAAPGHTTERYTWDSDHQPNYNDILAERIQSTQNTVGPVLSLA
DETPLDATSGISMGWNFSLSRRVTTGPVAALHYDGSTSSMYNEYGDSATTLALTDPLWHASVSTLGWRVNSQFGDVRPWA
QISYNQQFGENIWKAQSGLSRMTAGNQAGNWLDVTVGADVLLNPHLAAYAAFSQAENSATDSDYLYTLGVSARF

Specific function: Unknown

COG id: COG5571

COG function: function code N; Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

Organism=Escherichia coli, GI87082287, Length=234, Percent_Identity=72.2222222222222, Blast_Score=360, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR016955 [H]

Pfam domain/function: PF03797 Autotransporter [H]

EC number: NA

Molecular weight: Translated: 25866; Mature: 25866

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRKRRGRRTLRCLAGLMACSFFINTTYAWQQEYIAEAAPGHTTERYTWDSDHQPNYND
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHH
ILAERIQSTQNTVGPVLSLADETPLDATSGISMGWNFSLSRRVTTGPVAALHYDGSTSSM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEECCCCEEEEEECCCCHHH
YNEYGDSATTLALTDPLWHASVSTLGWRVNSQFGDVRPWAQISYNQQFGENIWKAQSGLS
HHHHCCCEEEEEEECCHHHHHHHHHEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH
RMTAGNQAGNWLDVTVGADVLLNPHLAAYAAFSQAENSATDSDYLYTLGVSARF
HHHCCCCCCCEEEEEECCCEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MIVRKRRGRRTLRCLAGLMACSFFINTTYAWQQEYIAEAAPGHTTERYTWDSDHQPNYND
CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHH
ILAERIQSTQNTVGPVLSLADETPLDATSGISMGWNFSLSRRVTTGPVAALHYDGSTSSM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEECCCCEEEEEECCCCHHH
YNEYGDSATTLALTDPLWHASVSTLGWRVNSQFGDVRPWAQISYNQQFGENIWKAQSGLS
HHHHCCCEEEEEEECCHHHHHHHHHEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH
RMTAGNQAGNWLDVTVGADVLLNPHLAAYAAFSQAENSATDSDYLYTLGVSARF
HHHCCCCCCCEEEEEECCCEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]