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The map label for this gene is rhaB [H]

Identifier: 29143874

GI number: 29143874

Start: 3672313

End: 3673782

Strand: Direct

Name: rhaB [H]

Synonym: t3572

Alternate gene names: 29143874

Gene position: 3672313-3673782 (Clockwise)

Preceding gene: 29143871

Following gene: 29143875

Centisome position: 76.63

GC content: 55.1

Gene sequence:

>1470_bases
ATGACTTTTCGCCATTGTGTCGCGGTTGATCTCGGCGCATCCAGCGGGCGCGTGATGCTGGCGCGTTACGACAGCAAACA
CCGTACCCTGACGCTACGTGAAATTCACCGTTTTGTGAACTGCCTACAAAAAACAGACGGGTTTGACACCTGGGACATCG
ACAGTCTGGAAAAGGATATCCGTCTTGGTCTGAAGAAAGTCTGCAATGAAGGCATTCTTATCGACAGCATCGGCATCGAC
ACCTGGGGCGTCGATTATGTCCTGCTGGATAAACAAGGTCAGCGTGTCGGCCTGCCGGTCTCCTACCGCGATAACCGTAC
CACGGGCATCATGCCGCAAGCGCTGGTCCAGATCGGCAAAAGCGAAATCTATCGCCGCAGCGGGATTCAGTTTCTGCCGT
TTAACACCATCTATCAGCTACGCGCGCTGACGAAACAACAGCCTGAGTTAACGGCGCAGGTCGCTCATGCGCTGCTGATG
CCTGATTATTTCAGCTACCGCCTGACCGGTGAAATGAACTGGGAGTACACCAACGCCACGACCACCCAGTTGGTCAATAT
CAATACCGATGACTGGGACGATACCCTGCTGGCGTGGACCGGCGCGAAAAAGAGCTGGTTCGGCCGCCCCTCGCACCCTG
GCAATGTTATCGGCGACTGGATTTGCCCGCAGGGCAACCGTATTCCGGTGGTAGCCGTCGCCAGCCACGATACCGCCAGC
GCCGTTATTGCCTCTCCGCTGGCAAATAAACATAGCGCTTACCTGTCTTCAGGCACCTGGTCGTTGATGGGTTTTGAAAG
CAAAAAACCCTACACCACTGATGAGGCGCTGGCCGCCAATATCACCAACGAAGGCGGCGCGGAAGGGCGTTATCGGGTAC
TGAAAAACATTATGGGTTTGTGGCTGCTCCAGCGCGTGCTGAAAGAACGGCGCATTACCGATCTGCCTGTGCTTATCGCC
CAAACAGAAGCGCTGCCGGCCTGCCGTTTCCTGATTAACCCGAATGACGATCGCTTTATCAATCCTGACGATATGCGCGC
CGAAATCCAAGCCGCCTGTCGCGAGACCGACCAGCCCGTTCCCGTCAGCGATGCCGAACTGGCGCGCTGCATTTTCGACA
GTCTGGCGCTGTTGTATGCCGACATTCTGCACGAACTGGCAAATCTGCGCGGCGAAAAATTTACCCAACTGCATATTGTC
GGCGGCGGATGCCAAAACGCGCTACTCAACCAGTTGTGCGCCAATGCATGTGGCATTCGCGTGATGGCCGGGCCGGTTGA
AGCCTCCACCCTTGGCAATATTGGTATTCAGCTTATGACCCTCGACGAATTAAACAACGTCGATGATTTCCGTCAGGTCG
TCAGCGCTAACTACGACCTGACAACCTATATCCCTAATCCTGATAGTGAAATTGCCCGCCACGTTGCGCAGTTTCAACCC
AAACGACAGACAAAGGAGCTTTGCGCATGA

Upstream 100 bases:

>100_bases
TGCCTTGTTGCCAGCGGCTCATTTTCCTGTCAGTAACGAGAAGGTAGGTCTTTGAGGGCTTTTTTAGACTGTGCGCAATG
ACTCTAAGAAGGACCTGATT

Downstream 100 bases:

>100_bases
CCACTCAACTGGAACAAGCCTGGGAACTGGCAAAACAACGTTTCGCCGCAGTAGGTATTGATGTCGAGGAGGCGCTGCGC
CAGCTCGATCGCCTGCCGGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGID
TWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLM
PDYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
AVIASPLANKHSAYLSSGTWSLMGFESKKPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPVLIA
QTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIV
GGGCQNALLNQLCANACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
KRQTKELCA

Sequences:

>Translated_489_residues
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGID
TWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLM
PDYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
AVIASPLANKHSAYLSSGTWSLMGFESKKPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPVLIA
QTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIV
GGGCQNALLNQLCANACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
KRQTKELCA
>Mature_488_residues
TFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGIDT
WGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMP
DYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTASA
VIASPLANKHSAYLSSGTWSLMGFESKKPYTTDEALAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPVLIAQ
TEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIVG
GGCQNALLNQLCANACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQPK
RQTKELCA

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=489, Percent_Identity=80.7770961145194, Blast_Score=840, Evalue=0.0,
Organism=Escherichia coli, GI1789168, Length=412, Percent_Identity=26.4563106796117, Blast_Score=101, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 54572; Mature: 54441

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDI
CCCCEEEEEEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RLGLKKVCNEGILIDSIGIDTWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGK
HHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCEECCEEEECCCCCCCCCHHHHHHHHH
SEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMPDYFSYRLTGEMNWEYTNAT
HHHHHHCCCEEECHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECEEECCCC
TTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHH
AVIASPLANKHSAYLSSGTWSLMGFESKKPYTTDEALAANITNEGGAEGRYRVLKNIMGL
HHHHHHHCCCCHHHCCCCCEEEEEECCCCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLKERRITDLPVLIAQTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPV
HHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
PVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIVGGGCQNALLNQLCANACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCE
VMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
EEECCCCCCHHCCCCEEEEEHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC
KRQTKELCA
CHHHHHHCC
>Mature Secondary Structure 
TFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQKTDGFDTWDIDSLEKDI
CCCEEEEEEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RLGLKKVCNEGILIDSIGIDTWGVDYVLLDKQGQRVGLPVSYRDNRTTGIMPQALVQIGK
HHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCEECCEEEECCCCCCCCCHHHHHHHHH
SEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLMPDYFSYRLTGEMNWEYTNAT
HHHHHHCCCEEECHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECEEECCCC
TTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIGDWICPQGNRIPVVAVASHDTAS
EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHH
AVIASPLANKHSAYLSSGTWSLMGFESKKPYTTDEALAANITNEGGAEGRYRVLKNIMGL
HHHHHHHCCCCHHHCCCCCEEEEEECCCCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLKERRITDLPVLIAQTEALPACRFLINPNDDRFINPDDMRAEIQAACRETDQPV
HHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
PVSDAELARCIFDSLALLYADILHELANLRGEKFTQLHIVGGGCQNALLNQLCANACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCE
VMAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSANYDLTTYIPNPDSEIARHVAQFQP
EEECCCCCCHHCCCCEEEEEHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC
KRQTKELCA
CHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA