Click here to switch to the map view.

The map label for this gene is yiaM [C]

Identifier: 29143868

GI number: 29143868

Start: 3665884

End: 3666399

Strand: Direct

Name: yiaM [C]

Synonym: t3566

Alternate gene names: 29143868

Gene position: 3665884-3666399 (Clockwise)

Preceding gene: 29143864

Following gene: 29143869

Centisome position: 76.5

GC content: 50.58

Gene sequence:

>516_bases
ATGAACACATTCAGAAAAGGACTTGATTTATTGCTGGGCGCTATCTGTTGCCTGGTGCTGGCGATAATGGTTGGCATCGC
CTGCTGGCAGGTGGTGAGCCGCTACATTCTGGGCGTTCCCAGCACCCTTACCGAAGAGATGCTGCGATTTCTCCTGGTGT
GGGTATCAATGCTGGGCATGGCTTTTGTCGCCGGTCAGAAACAGCATATCAGTCTGACTATCTTACTGGATAAGGTGTCG
CCGACGATTCGCGGCTGGTGGGATATCATCCTGCAGGTCATTTTTATCGCGTTTTCCATTTGGGTATTGATTATCGGCGG
CTTAAAGATTTCTGCGATTTCTATGCTGCAAATCTCCCCTGCGCTGGGCATTCCGATGGGGAAAATTTATTACGCGCTCC
CCTGCGCGGGCATACTGATCATCCTCTATGGGCTACTGAATATCGTTGACGCCCTGAAAGCTATCCATTCCGCCACGGAT
ACCACTGAGCACACTCTGGAGAAATCACATGATTGA

Upstream 100 bases:

>100_bases
AGTACAGCCTATTTACGACGGTCTGAAAAACAAACCGCGGCTTTACGGGCTGTATCAACGTATCCAGACAGCAAAAAATT
AATCTAATCAGGAAATTAAG

Downstream 100 bases:

>100_bases
CCCTATTTTTGCGTCCTGTACGCTAATTGCCGTCTTTGTTGTTTTACTGGCCATGGGCGCGCCTATCGGGATCTGCATCG
TTATCGCCTCTTTCAGCACC

Product: membrane transporter

Products: NA

Alternate protein names: Tripartite ATP-Independent Periplasmic Transporter DctQ; C4-Dicarboxylate Transport System; TRAP Transporter DctQ-Like Membrane Protein; Aspartate Kinase Monofunctional Class; TRAP Transporter Small Transmembrane Protein; Trap-Family Transport System Permease Protein; 30S Ribosomal; TRAP-Type C4-Dicarboxylate Transport System; Membrane Transporter; TRAP Transporter DctQ Family Protein; C4-Dicarboxylate Transport System Permease; TRAP Dicarboxylate Transporter DctQ Subunit; C4-Dicarboxylate Permease Small Protein; C4-Dicarboxylate Transporter Small Permease Component; ATP-Independent Transporter Subunit; Inner Membrane Protein; Tripartite ATP-Independent Periplasmic Transporter

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MNTFRKGLDLLLGAICCLVLAIMVGIACWQVVSRYILGVPSTLTEEMLRFLLVWVSMLGMAFVAGQKQHISLTILLDKVS
PTIRGWWDIILQVIFIAFSIWVLIIGGLKISAISMLQISPALGIPMGKIYYALPCAGILIILYGLLNIVDALKAIHSATD
TTEHTLEKSHD

Sequences:

>Translated_171_residues
MNTFRKGLDLLLGAICCLVLAIMVGIACWQVVSRYILGVPSTLTEEMLRFLLVWVSMLGMAFVAGQKQHISLTILLDKVS
PTIRGWWDIILQVIFIAFSIWVLIIGGLKISAISMLQISPALGIPMGKIYYALPCAGILIILYGLLNIVDALKAIHSATD
TTEHTLEKSHD
>Mature_171_residues
MNTFRKGLDLLLGAICCLVLAIMVGIACWQVVSRYILGVPSTLTEEMLRFLLVWVSMLGMAFVAGQKQHISLTILLDKVS
PTIRGWWDIILQVIFIAFSIWVLIIGGLKISAISMLQISPALGIPMGKIYYALPCAGILIILYGLLNIVDALKAIHSATD
TTEHTLEKSHD

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18795; Mature: 18795

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTFRKGLDLLLGAICCLVLAIMVGIACWQVVSRYILGVPSTLTEEMLRFLLVWVSMLGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AFVAGQKQHISLTILLDKVSPTIRGWWDIILQVIFIAFSIWVLIIGGLKISAISMLQISP
HHHCCCCHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
ALGIPMGKIYYALPCAGILIILYGLLNIVDALKAIHSATDTTEHTLEKSHD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
>Mature Secondary Structure
MNTFRKGLDLLLGAICCLVLAIMVGIACWQVVSRYILGVPSTLTEEMLRFLLVWVSMLGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AFVAGQKQHISLTILLDKVSPTIRGWWDIILQVIFIAFSIWVLIIGGLKISAISMLQISP
HHHCCCCHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
ALGIPMGKIYYALPCAGILIILYGLLNIVDALKAIHSATDTTEHTLEKSHD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA