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The map label for this gene is ydfH [C]

Identifier: 29143605

GI number: 29143605

Start: 3364367

End: 3364972

Strand: Reverse

Name: ydfH [C]

Synonym: t3272

Alternate gene names: 29143605

Gene position: 3364972-3364367 (Counterclockwise)

Preceding gene: 29143606

Following gene: 29143604

Centisome position: 70.22

GC content: 49.5

Gene sequence:

>606_bases
GTGCTGCGTAAAGCGATTCTTTCGAGGGAGTTAGTGGAAGGGCAAGAGATTACGTTAGAAGGCATTGCCGGAATGGTCGG
CGTGTCCAGTATGCCAGTGCGCGAGGCGTTTCAGATTCTGGCGGCGGATGGGCTGATAAAAGTGCGCCCTAATAAAGGGG
CGGTGGTGTTGGGCATCAATGAACAAACGATCCGTGAACACTATGAAATTCGCGCGCTGTTAGAAAGTGAGGCGGTGGCT
AAAGCTTCTCGTCCTGGCACCGATATTTCGCGGATAGCCGAGGTGCATTATGCCGCTGAAAAGGCTCTCGCGGAAAATAA
CTCGGCGGAATACTCCGACCTGAATCAGGCATTTCATATGGAAATATGGAATGTTGCTGGCAACGAAAAAATGAAAATGT
TGCTCTGTAATATGTGGAACGGCCTGTCGATGGGCCATAAGGTCACCGAAGAAGAGTATGCCGTGATTTCCATTCAGGAA
CATAAAAGTATTCTGCAAGCTCTTGAACTTCATGATGAAACATTGGCACGCCAGCGCATGCGCGAACACATTATTCGCTC
AATGGAGAATATGCTGACCCGCTATGTTGGTGACCCTTCTGCCTGA

Upstream 100 bases:

>100_bases
TTAGCAGAAATAATGCGTCAACATATGAAGGATTGGGAAAGTGCAGAGGCCTAAGTTAGGGAAGATTAAGCTTCTTTCAG
CGAAAGAACAGGTCGCGGCG

Downstream 100 bases:

>100_bases
TCTTTTCGCCTGCGTGAGTATCGCAGGCGCTTCAACCAATTCTTCAATTCTATTAATCACGTCCAGTAACGATCCAACTA
CGATCTTGATGTAGATCCCA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR Domain-Containing Protein; GntR Family Regulatory Protein; Transcriptional Regulator MdcY Family Protein; GntR Domain Protein; Transcription Regulator; Regulatory Protein; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator GntR-Family; HTH-Type Transcriptional Regulator; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator GntR; Gntr Family Transcriptional Regulator; GntR Transcriptional Regulator GntR; Regulatory Protein GntR Family; Regulatory Protein GntR HTH; Transcriptional Regulator Gntr Family; GntR Family Transcription Regulator; GntR-Family Protein Transcriptional Regulator

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVA
KASRPGTDISRIAEVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQE
HKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA

Sequences:

>Translated_201_residues
MLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVA
KASRPGTDISRIAEVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQE
HKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA
>Mature_201_residues
MLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVA
KASRPGTDISRIAEVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQE
HKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22528; Mature: 22528

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIN
CCHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEECC
EQTIREHYEIRALLESEAVAKASRPGTDISRIAEVHYAAEKALAENNSAEYSDLNQAFHM
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
EIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRM
HHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
REHIIRSMENMLTRYVGDPSA
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIN
CCHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEECC
EQTIREHYEIRALLESEAVAKASRPGTDISRIAEVHYAAEKALAENNSAEYSDLNQAFHM
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
EIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRM
HHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
REHIIRSMENMLTRYVGDPSA
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA