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The map label for this gene is yhbU [H]

Identifier: 29143530

GI number: 29143530

Start: 3282935

End: 3283930

Strand: Direct

Name: yhbU [H]

Synonym: t3194

Alternate gene names: 29143530

Gene position: 3282935-3283930 (Clockwise)

Preceding gene: 29143527

Following gene: 29143531

Centisome position: 68.51

GC content: 58.43

Gene sequence:

>996_bases
ATGGAGCTGCTCTGCCCTGCCGGAAATCTCCCGGCGCTGAAGGCGGCCATCGAAAACGGCGCTGACGCCGTTTATATCGG
GTTAAAAGACGATACCAATGCCCGTCATTTTGCCGGCCTTAACTTTACCGAAAAAAAATTGCAGGAAGCGGTGAGTTTTG
TTCACCAGCATCGCCGCAAATTACACATCGCCATTAATACTTTTGCGCATCCGGACGGCTATGCCCGCTGGCAGCGCGCC
GTGGATATGGCGGCGCAGCTTGGCGCCGACGCGCTGATTCTTGCCGACCTCGCTATGCTGGAATATGCCGCAGAGCGTTA
CCCGCATATTGAGCGCCATGTTTCCGTTCAGGCCTCGGCAACCAACGAAGAAGCGATTCGCTTTTATCACCGCAACTTTG
ATGTCCACCGTGTAGTACTGCCGCGTGTACTGTCGATTCACCAGGTAAAACAACTGGCCCGCGTCACGCCGGTGCCGCTG
GAGGTATTCGCGTTTGGCAGCCTGTGCATTATGGCAGAAGGTCGCTGCTATCTTTCTTCTTACCTGACGGGGGAGTCGCC
CAATACCGTCGGCGCCTGCTCTCCCGCCCGCTTTGTCCGTTGGCAGCAAACGCCGCAGGGGCTGGAATCGCGCCTGAATG
ATGTCCTGATTGACCGTTACCAGGATGGCGAAAACGCAGGCTACCCAACGCTGTGTAAAGGCCGCTATTTAGTGGACGGC
GAGCGCTATCACGCGCTGGAGGAGCCAACCAGCCTGAACACGCTGGAACTGCTGCCGGAGCTCATGGCGGCGAACATCGC
TTCGGTGAAGATCGAAGGCCGCCAGCGCAGCCCGGCCTACGTCAGCCAGGTGGCGAAAGTGTGGCGCCAGGCGATAGATC
GCTGCAAAGCCGCCCCGCAAAACTTCGTTCCACAGCGCGACTGGATGGAGACGCTCGGCGCGATGTCCGAAGGCACTCAA
ACCACGCTTGGCGCATATCACCGTAAATGGCAGTGA

Upstream 100 bases:

>100_bases
GCCTTTAACTGCCTTAAATCAAAAATTGTCGCAGCAAGGTTAACTAAAATCCCTGTTCGTTAACAATTTTGCGTCGCAGA
CGTAACCCTCAGGATAAATT

Downstream 100 bases:

>100_bases
GAGGAGCTATGAAATATTCCTTAGGACCGGTGCTTTATTACTGGCCGAAAGAGACGCTGGAAGATTTTTATCAGCAGGCC
GCAAAAAGCAGCGCTGATAT

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRA
VDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPL
EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDG
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQ
TTLGAYHRKWQ

Sequences:

>Translated_331_residues
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRA
VDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPL
EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDG
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQ
TTLGAYHRKWQ
>Mature_331_residues
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRA
VDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPL
EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDG
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQ
TTLGAYHRKWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=331, Percent_Identity=96.9788519637462, Blast_Score=672, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=324, Percent_Identity=29.9382716049383, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI87081910, Length=293, Percent_Identity=32.7645051194539, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 37142; Mature: 37142

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRK
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHE
LHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASA
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEECC
TNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSS
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEECCCHHHHH
YLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDG
HHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEECC
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQ
HHHHHCCCCCCCCHHHHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
NFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
CCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRK
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHE
LHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASA
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEECC
TNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSS
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEECCCHHHHH
YLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDG
HHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEECC
ERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQ
HHHHHCCCCCCCCHHHHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
NFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
CCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]