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The map label for this gene is yqjA [H]

Identifier: 29143485

GI number: 29143485

Start: 3238185

End: 3238847

Strand: Direct

Name: yqjA [H]

Synonym: t3146

Alternate gene names: 29143485

Gene position: 3238185-3238847 (Clockwise)

Preceding gene: 29143484

Following gene: 29143486

Centisome position: 67.58

GC content: 51.89

Gene sequence:

>663_bases
ATGGAACTACTGACTCAATTGCTGAATGCCCTGTGGGCTCAGGACTTTGAAACACTGGCCAATCCTTCCATGATTGGCAT
GTTATATTTTGTGTTATTTATGATTTTGTTTCTGGAAAATGGGCTGCTCCCTGCCGCCTTTTTGCCTGGCGACAGCCTGT
TGATACTGGTCGGCGTGCTGATCGCCAAAGGCGCGATGGGTTTTCCACAAACCATTTTGCTGCTTACCGTCGCGGCCAGC
CTGGGTTGCTGGGTCAGCTATATACAGGGCCGCTGGCTGGGGAATACCCGCACCGTGCAGAATTGGCTCTCTCATCTCCC
CGCACATTATCATCAACGCGCCCATCACCTTTTCCATAAACACGGCCTGTCGGCATTATTGATAGGCCGTTTTATCGCGT
TTGTCAGAACGCTGCTACCCACCATTGCCGGCATATCCGGCCTGAATAACGCGCGCTTTCAGTTTTTCAACTGGATGAGT
GGCTTGTTGTGGGTGCTTATCCTGACGTCGCTGGGCTATCTGCTGGGCAAAACGCCCGTCTTTATGAAGTATGAAGATCA
GCTAATGTCATGCCTGATGCTGCTGCCCGTGGTGCTGCTCTTTTTTGGCCTGGCGGGTTCACTGGTCATGCTGTGGAAAA
AGAAGTATGGGAGCCGGGGATAA

Upstream 100 bases:

>100_bases
TTTGCCGTTTCCGCAACGCTGATAAAAACTCCAACTCTGTTGCGGCAGTGCAAACCTCAGATCACCGGCGTGACGTTAAC
CGATTCTCCAGGAATACTGA

Downstream 100 bases:

>100_bases
CTTATGCTTAAACCACGCATAACTGCCCGACAACTCATTTGGATCAGCGCTTTTCTGCTGATGCTGACCATACTCATGAT
GACGTGGTCAACGCTGCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVLIAKGAMGFPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG

Sequences:

>Translated_220_residues
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVLIAKGAMGFPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG
>Mature_220_residues
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVLIAKGAMGFPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=220, Percent_Identity=95, Blast_Score=399, Evalue=1e-113,
Organism=Escherichia coli, GI1789384, Length=216, Percent_Identity=63.4259259259259, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1788656, Length=154, Percent_Identity=34.4155844155844, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24641; Mature: 24641

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGAMGFPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
HGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMSGLLWVLILTSLGYLLGKTPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGAMGFPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
HGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMSGLLWVLILTSLGYLLGKTPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]