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The map label for this gene is yghB [H]

Identifier: 29143425

GI number: 29143425

Start: 3163499

End: 3164158

Strand: Direct

Name: yghB [H]

Synonym: t3082

Alternate gene names: 29143425

Gene position: 3163499-3164158 (Clockwise)

Preceding gene: 29143424

Following gene: 29143427

Centisome position: 66.02

GC content: 54.09

Gene sequence:

>660_bases
ATGGCTGTCATTCAAGATATTATCGCTGCGCTCTGGCAACATGATTTTGCCGCGCTGGCGAATCCACACGTTGTTAGCGT
CGTCTACTTTGTCATGTTCGCCACGCTATTTTTAGAAAACGGTCTGCTGCCAGCGTCATTCTTACCCGGCGATAGTCTGC
TGCTACTGGCAGGCGCGTTGATCGCCCAGGATGTGATGCATTTTTTGCCGACGATTGGCATTCTCACCGCCGCGGCCAGT
CTCGGCTGCTGGCTAAGTTATATCCAGGGACGCTGGCTCGGTAATACGCGTACCGTCAAAGGCTGGCTAGCGCAGCTTCC
GGCAAAATATCATCAGCGCGCCACCTGCATGTTTGACCGTCACGGTTTGTTAGCGTTGCTTGCCGGGCGCTTTCTGGCGT
TTGTCCGCACGCTGCTGCCAACAATGGCGGGCATTTCCGGCCTGTCCAACCGCCGGTTTCAGTTTTTTAACTGGTTAAGC
GGCCTGCTGTGGGTGACTGTCGTGACCAGCTTCGGCTACGCGCTCAGTATGATCCCGTTTGTTAAGCGCCATGAAGACCA
GGTAATGACATTTTTAATGATCCTTCCCGTCGCGCTACTGGTCGCCGGGCTGTTAGGTACGCTGGTCGTGGTGATTAAAA
AGAAATACTGTAACGCCTGA

Upstream 100 bases:

>100_bases
GAAAAGTCTGCGTTTGTTGCGTCCGGGATCAAGGCATCCCGGACGATTCAGGAGTACAATAGGCAGATAAAAGCGTAAAT
GCTGTTCCACAGGAAAGTTC

Downstream 100 bases:

>100_bases
CGTATCCATAATCGGCCAGGATGGCCCGGTTACGCTTCGTTGCCCCGTGGCGGGATGCCCCACTTAGCTCCCTTGCATTG
TCCGCATTCTTGCCGCATCT

Product: DedA family integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MAVIQDIIAALWQHDFAALANPHVVSVVYFVMFATLFLENGLLPASFLPGDSLLLLAGALIAQDVMHFLPTIGILTAAAS
LGCWLSYIQGRWLGNTRTVKGWLAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLSNRRFQFFNWLS
GLLWVTVVTSFGYALSMIPFVKRHEDQVMTFLMILPVALLVAGLLGTLVVVIKKKYCNA

Sequences:

>Translated_219_residues
MAVIQDIIAALWQHDFAALANPHVVSVVYFVMFATLFLENGLLPASFLPGDSLLLLAGALIAQDVMHFLPTIGILTAAAS
LGCWLSYIQGRWLGNTRTVKGWLAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLSNRRFQFFNWLS
GLLWVTVVTSFGYALSMIPFVKRHEDQVMTFLMILPVALLVAGLLGTLVVVIKKKYCNA
>Mature_218_residues
AVIQDIIAALWQHDFAALANPHVVSVVYFVMFATLFLENGLLPASFLPGDSLLLLAGALIAQDVMHFLPTIGILTAAASL
GCWLSYIQGRWLGNTRTVKGWLAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLSNRRFQFFNWLSG
LLWVTVVTSFGYALSMIPFVKRHEDQVMTFLMILPVALLVAGLLGTLVVVIKKKYCNA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789384, Length=219, Percent_Identity=94.5205479452055, Blast_Score=400, Evalue=1e-113,
Organism=Escherichia coli, GI1789481, Length=218, Percent_Identity=63.7614678899083, Blast_Score=267, Evalue=5e-73,
Organism=Escherichia coli, GI1788656, Length=189, Percent_Identity=30.6878306878307, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24153; Mature: 24022

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVIQDIIAALWQHDFAALANPHVVSVVYFVMFATLFLENGLLPASFLPGDSLLLLAGAL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAQDVMHFLPTIGILTAAASLGCWLSYIQGRWLGNTRTVKGWLAQLPAKYHQRATCMFDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHC
HGLLALLAGRFLAFVRTLLPTMAGISGLSNRRFQFFNWLSGLLWVTVVTSFGYALSMIPF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKRHEDQVMTFLMILPVALLVAGLLGTLVVVIKKKYCNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVIQDIIAALWQHDFAALANPHVVSVVYFVMFATLFLENGLLPASFLPGDSLLLLAGAL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAQDVMHFLPTIGILTAAASLGCWLSYIQGRWLGNTRTVKGWLAQLPAKYHQRATCMFDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHC
HGLLALLAGRFLAFVRTLLPTMAGISGLSNRRFQFFNWLSGLLWVTVVTSFGYALSMIPF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKRHEDQVMTFLMILPVALLVAGLLGTLVVVIKKKYCNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]