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The map label for this gene is 29143396

Identifier: 29143396

GI number: 29143396

Start: 3132317

End: 3132802

Strand: Reverse

Name: 29143396

Synonym: t3052

Alternate gene names: NA

Gene position: 3132802-3132317 (Counterclockwise)

Preceding gene: 29143397

Following gene: 29143394

Centisome position: 65.38

GC content: 50.41

Gene sequence:

>486_bases
ATGGATGCGATTTTTTTAAAGCTCGACAATATCAAAGGCGAAAGCCAGGTTGAAGGCTTTGAAGATCAGATAGAGATCAT
GTCTTATAGCCACAATGTGGCAATGCAGGTAAATAACGATGTTAGCCTCACTGAGCGGACTTCCGGGCGTGCGCATGTTG
GTGAAATGTCGCTCACCAAATTTGTCGACCTCGCCACGCCTGTGCTCAATGAGTACTGCTGTAGCGGGAGGCTAATTAGA
ACCGCGGTGCTGACGTTGTGCCGCAATGACGACGGCAAAATGCGGTCGCTTATCGTTTATACCCTGACAAACGTGCTGAT
ATCACAACTCAGTGTTAGCGGCGGCGCCGGCGGTAAGCCGGTGGAAACGATGTCGCTGAACTTCACGAAAATCAAATGGC
AAATCACTGCCGAGAAATCAGACGGCGCTCAACAGGAGTCCAGAGCGTCAGTATGGGATCTGGCGATGGACCAGATAGGG
AAATGA

Upstream 100 bases:

>100_bases
GTGTTTTTTGGTCGTTGCGCTTTTAATAAGAGTCACAAGCGTTGGCCGCCGGTATTCGTCTGGCTGCTGAACTGCCACCT
GATCAACAAGGAGATAAATC

Downstream 100 bases:

>100_bases
TGATGACGCCAACCATTCCGGTCGCGCTATTCGACAGGCTCTTGGTTGAGGGGATAAGCCCACATGAATTGGTACGCCGC
AAATTAATATGTTTATTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Hemolysin-Coregulated Protein; Hcp Family T6SS H; Hcp1 Family Type VI Secretion System Effector; Cytoplasmic Protein SciM; Type VI Secretion System Protein; Secretion System Protein Hemolysin-Coregulated Protein; SciM Protein

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIKWQITAEKSDGAQQESRASVWDLAMDQIG
K

Sequences:

>Translated_161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIKWQITAEKSDGAQQESRASVWDLAMDQIG
K
>Mature_161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIKWQITAEKSDGAQQESRASVWDLAMDQIG
K

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17723; Mature: 17723

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTK
CCEEEEEEECCCCCCCCCCCHHHHHHEEECCEEEEEECCCCEEEECCCCCCEECCHHHHH
FVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKP
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VETMSLNFTKIKWQITAEKSDGAQQESRASVWDLAMDQIGK
EEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTK
CCEEEEEEECCCCCCCCCCCHHHHHHEEECCEEEEEECCCCEEEECCCCCCEECCHHHHH
FVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKP
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VETMSLNFTKIKWQITAEKSDGAQQESRASVWDLAMDQIGK
EEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA