Click here to switch to the map view.

The map label for this gene is endA [H]

Identifier: 29143355

GI number: 29143355

Start: 3096585

End: 3097292

Strand: Direct

Name: endA [H]

Synonym: t3005

Alternate gene names: 29143355

Gene position: 3096585-3097292 (Clockwise)

Preceding gene: 29143354

Following gene: 29143356

Centisome position: 64.62

GC content: 56.07

Gene sequence:

>708_bases
ATGTACCGTAATTTTTCTTTTGCTGCTGCGTTGCTGGCCGCAGCGTTTTCAGGCCAGGCATTGGCCGACGGCATTAACAA
TTTTTCTCAGGCCAAAGCGGCGAGCGTCAAAGTCAATGCCGACGCGCCCGGCAGCTTTTACTGCGGGTGCCAAATCCGCT
GGCAGGGTAAAAAAGGCGTCGTAGACCTGGAGTCCTGCGGCTATAAGGTGCGTAAAAACGAGAATCGCGCCAGACGCATT
GAGTGGGAGCACGTTGTCCCCGCCTGGCAATTCGGTCATCAGCGCCAGTGCTGGCAGGACGGCGGGCGAAAAAACTGCGC
TAAAGACCCGGTCTACTGCAAAATGGAAAGCGATATGCATAACCTGCAACCCGCGATTGGCGAAGTGAATGGCGATCGCG
GCAACTTTATGTATAGCCAGTGGAACGGCGGCGAAGGTCAGTACGGGCAGTGCGCCATGAAAGTGGATTTTAAAGCGAAG
CTCGCCGAGCCGCCCGCCCGCGCCCGTGGCGCAATCGCCCGCACTTATTTTTATATGCGCGACCAATACCAACTGAAACT
TTCCCGCCAACAAACGCAGCTTTTTAACGTCTGGGATAAGCAGTACCCCGTTACCGCCTGGGAGTGCGAGCGCGATGCGC
GTATCGCGAAGGTCCAGGGTAATCATAATCCCTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAA

Upstream 100 bases:

>100_bases
GGTAGTTCCCCGAAACGTCCGGGAACTTTCCTGAGCGGACTGATTGCATACAGACACAACTTTCGCTACGTTGCGGGCTC
GTTTTGCTATGGAGTGTGCA

Downstream 100 bases:

>100_bases
CCTACACTAGCGGGATTCTTGTTAACCCATGCCCTGGATAGCCAAACGCCGGGGCCATGACGCGGATTTTTTTATTATGC
GTATTCCCCGCATTTATCAC

Product: endonuclease I

Products: NA

Alternate protein names: Endonuclease I; Endo I [H]

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPGSFYCGCQIRWQGKKGVVDLESCGYKVRKNENRARRI
EWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYCKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKAK
LAEPPARARGAIARTYFYMRDQYQLKLSRQQTQLFNVWDKQYPVTAWECERDARIAKVQGNHNPYVQRACQARKS

Sequences:

>Translated_235_residues
MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPGSFYCGCQIRWQGKKGVVDLESCGYKVRKNENRARRI
EWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYCKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKAK
LAEPPARARGAIARTYFYMRDQYQLKLSRQQTQLFNVWDKQYPVTAWECERDARIAKVQGNHNPYVQRACQARKS
>Mature_235_residues
MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPGSFYCGCQIRWQGKKGVVDLESCGYKVRKNENRARRI
EWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYCKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKAK
LAEPPARARGAIARTYFYMRDQYQLKLSRQQTQLFNVWDKQYPVTAWECERDARIAKVQGNHNPYVQRACQARKS

Specific function: Has double-strand break activity [H]

COG id: COG2356

COG function: function code L; Endonuclease I

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the endA/nucM nuclease family [H]

Homologues:

Organism=Escherichia coli, GI1789314, Length=235, Percent_Identity=87.2340425531915, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007346 [H]

Pfam domain/function: PF04231 Endonuclease_1 [H]

EC number: =3.1.21.1 [H]

Molecular weight: Translated: 26741; Mature: 26741

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPGSFYCGCQIRWQGKKGV
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCCE
VDLESCGYKVRKNENRARRIEWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYCKMESDMH
EEHHHCCEEEECCCCHHHEEEHHHCCCHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCHH
NLQPAIGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKAKLAEPPARARGAIARTYFYMR
HCCHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEECEEECCCCCHHHHHHHHHHHEEEC
DQYQLKLSRQQTQLFNVWDKQYPVTAWECERDARIAKVQGNHNPYVQRACQARKS
CCEEEEEHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHCCC
>Mature Secondary Structure
MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPGSFYCGCQIRWQGKKGV
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCCE
VDLESCGYKVRKNENRARRIEWEHVVPAWQFGHQRQCWQDGGRKNCAKDPVYCKMESDMH
EEHHHCCEEEECCCCHHHEEEHHHCCCHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCHH
NLQPAIGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKAKLAEPPARARGAIARTYFYMR
HCCHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEECEEECCCCCHHHHHHHHHHHEEEC
DQYQLKLSRQQTQLFNVWDKQYPVTAWECERDARIAKVQGNHNPYVQRACQARKS
CCEEEEEHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7867949; 9278503; 4955462; 8113204 [H]