| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
Click here to switch to the map view.
The map label for this gene is fimD [H]
Identifier: 29142709
GI number: 29142709
Start: 2380483
End: 2383095
Strand: Reverse
Name: fimD [H]
Synonym: t2317
Alternate gene names: 29142709
Gene position: 2383095-2380483 (Counterclockwise)
Preceding gene: 29142710
Following gene: 29142708
Centisome position: 49.73
GC content: 55.84
Gene sequence:
>2613_bases ATGAAGAAGACAACCTGGTTTGCAGGGCGATTTCCCGGCTATGTATCACCGTTAAGCGGCGTGGCGCTGTCGGTGTTGGC AGCTCTGTGTCCGCTGACGAGCCGCGGCGAAAGTTATTTCAACCCTGCGTTTTTGTCGGCGGATACCGCGTCCGTGGCGG ATTTATCTCGCTTTGAAAAAGGTAATCATCAGCCTCCCGGTATTTACCGGGTGGATATCTGGCGTAACGACGAATTCGTA GCGACGCAGGATATTCGTTTTGAGGCGGGCGCCGTGGGCGCCGGCGATAAATCCGGCGGCCTGATGCCTTGTTTTACACC GGAGAGGATTAAACGGCTGGGCGTGAATACCGCGGTGTTCCCTGTCTCAGATAAAGGCGTCGATACCACGTGTATTCACC TTCCTGAGAAAATCCCGGGCGCGGAGGTCGCGTTCGATTTCGCGTCGATGCGCTTAAACATTAGCTTGCCGCAGGCGTCA TTGCTCAACAGCGCGCGTGGCTATATCCCGCCGGAAGAGTGGGATGAAGGGATACCCGCCGCACTCATTAATTACAGTTT TACCGGTAGCCGCGGAACAGACAGCGATAGCTATTTTTTGAGTCTGCTGAGCGGGTTGAACTATGGCCCCTGGCGGCTGC GTAATAACGGAGCCTGGAGCTATTCGAAAGGGGACGGCTATCATTCGCAACGCTGGAACAACATTGGCACCTGGGTACAG CGCGCCATCATTCCGCTAAAAAGCGAACTGGTCATGGGGGACAGCCATACCGGGAACGATGTTTTCGACAGCGTCGGCTT TCGCGGAGCGCGGCTGTACTCTTCTGACAATATGTATCCCGATAGCCTGCAGGGCTACGCCCCCACGGTCAGAGGGATCG CCCGGACGGCGGCAAAGCTGACGATACGACAGAACGGGTATGTTATCTACCAAAGCTATGTGCCGCCGGGCGCGTTTGCG ATTACCGATCTTAATCCTACCTCTTCCAGCGGCGACCTTGAGGTGACGGTAGATGAAAAAGACGGTAGCCAACAACGTTA CACGGTGCCTTACTCTACCGTTCCGCTATTGCAGCGTGAGGGCAGGGTGAAGTATGACCTGGTGGCCGGGGATTTTCGCA GCGGCAATAGTCAGCAGTCTTCGCTATTCTTTTTCCAGGGAACGGTGATTGCCGGCCTGCCTGCGGGGCTGACGGCTTAC GGCGGTACGCAACTTGCCGATCGTTACCGTGCTGTGGTGGTCGGGGCGGGGCAAAATTTGGGTGACTGGGGGGCCGTGTC GGTCGATGTCACACATGCGCGTAGCCAACTGGCAGATGACAGCACCCATCAGGGGCAATCGTTGCGTTTTCTGTACGCCA AATCGCTGAATAATTACGGGACTAATTTTCAATTGCTGGGTTACCGCTATTCCACGCGCGGATTTTACACCCTGGATGAT GTGGCATACCGCAGTATGGAAGGGTACGACTACGAATACGATAGCGACGGACGCCGCCATAAAGTGCCGGTGGCGCAGAG CTACCACAATCTCCGCTACAGCAAAAAAGGCCGCTTTCAGGTCAATATTTCGCAAAATCTGGGGAATTACGGGTCACTGT ATCTTTCCGGCAGTCAACAAAATTACTGGAATACGGCGGATACCAATACCTGGTATCAACTGGGATACGCCAGTGGATGG CAAGGCATAAGTTATTCGCTGTCATGGTCGTGGAGCGAGTCGGTGGGGATCTCAGGCGCCGACCGCATTCTGGCATTCAA TATGTCCGTTCCGTTTAGCGTTCTGACCGGACGGCGCTATGCGCGCGACACTATTCTTGATCGTACTTATGCCACGTTTA ACGCCAACCGCAACCGCGACGGCGACAATAGCTGGCAGACCGGTGTGGGCGGCACGCTTCTGGAAGGACGTAATCTGAGC TACAGCGTGACGCAGGGGCGTAGCAGTACCAATGGTCATAGCGGCAGCGCCAGCGCTAGCTGGCAGGCGACGTATGGCAC GCTGGGCGTGGGATATAACTACGATCGCGATCAGCATGACTATAACTGGCAACTTTCCGGCGGCGTGGTCGGTCATACGG ATGGTATTACGTTTAGCCAACCGTTGGGCGATACCAATGTCTTGATTAAAGCGCCGGGAGCGAAAGGCGTGCGCATCGAA AACCAGACCGGCGTGAAAACGGACTGGCGGGGCTATGCGGTAATGCCCTACGCCACGGTATATCGCTATAACCGCGTCGC GTTAGATACCAACACGATGGACAACCATACCGATGTCGAAAATAACGTCAGCAGCGTGGTGCCGACTGAAGGCGCGCTGG TGCGGGCTGCTTTTGATACGCGGATAGGCGTAAGGGCAATCATTACCGCGAGGCTTGGCGGACGTCCGTTACCGTTTGGC GCGATAGTACGAGAAACCGCCAGCGGCATTACCAGCATGGTCGGCGATGACGGACAAATTTATCTGAGCGGCTTGCCGCT AAAAGGTGAACTGTTCATCCAGTGGGGAGAGGGGAAAAACGCGCGTTGTATCGCCCCTTACGCCCTGGCGGAGGATAGCC TGAAGCAGGCGATTACGATAGCCAGCGCGACCTGTATCCGTCCGTCGTCATAA
Upstream 100 bases:
>100_bases CAGCGTGACATTTCAGACCGTCAATGATTACGGCGCATTGACGTCGGCGACAACAGCCAGTCTCGGTTAAGCAGAGAGCG TGAAGCCACACGAGAACACG
Downstream 100 bases:
>100_bases AAGGAAAAATAGAGATGAAAATATACTCAGCGCTATTGCTGGCGGGGACCGCACTCTTTTTCACCCATCCCGCGCTGGCG ACGGTTTGCCGTAATTCAAA
Product: outer membrane usher protein FimD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGAGDKSGGLMPCFTPERIKRLGVNTAVFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWSYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVMGDSHTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVPPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSLFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGQNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGNYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGISGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSTNGHSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHTDGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPSS
Sequences:
>Translated_870_residues MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGAGDKSGGLMPCFTPERIKRLGVNTAVFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWSYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVMGDSHTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVPPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSLFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGQNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGNYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGISGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSTNGHSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHTDGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPSS >Mature_870_residues MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV ATQDIRFEAGAVGAGDKSGGLMPCFTPERIKRLGVNTAVFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWSYSKGDGYHSQRWNNIGTWVQ RAIIPLKSELVMGDSHTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVPPGAFA ITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSLFFFQGTVIAGLPAGLTAY GGTQLADRYRAVVVGAGQNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGNYGSLYLSGSQQNYWNTADTNTWYQLGYASGW QGISYSLSWSWSESVGISGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLS YSVTQGRSSTNGHSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHTDGITFSQPLGDTNVLIKAPGAKGVRIE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFG AIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPSS
Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786744, Length=857, Percent_Identity=69.7782963827305, Blast_Score=1274, Evalue=0.0, Organism=Escherichia coli, GI1790772, Length=867, Percent_Identity=47.4048442906574, Blast_Score=806, Evalue=0.0, Organism=Escherichia coli, GI1787172, Length=869, Percent_Identity=47.4108170310702, Blast_Score=779, Evalue=0.0, Organism=Escherichia coli, GI1789533, Length=856, Percent_Identity=37.6168224299065, Blast_Score=551, Evalue=1e-158, Organism=Escherichia coli, GI1786332, Length=883, Percent_Identity=31.9365798414496, Blast_Score=390, Evalue=1e-109, Organism=Escherichia coli, GI1788427, Length=832, Percent_Identity=30.5288461538462, Blast_Score=322, Evalue=5e-89, Organism=Escherichia coli, GI87081778, Length=871, Percent_Identity=28.1285878300804, Blast_Score=252, Evalue=9e-68, Organism=Escherichia coli, GI1789610, Length=704, Percent_Identity=26.5625, Blast_Score=137, Evalue=2e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 95120; Mature: 95120
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEK CCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHC GNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGAGDKSGGLMPCFTPERIKRLGVNTAVF CCCCCCCEEEEEEEECCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEE PVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPA ECCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCHHHHCCCCCE ALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWSYSKGDGYHSQRWNNIGTWVQ EEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCHHCCCHHHHHHH RAIIPLKSELVMGDSHTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKL HHHCCCCCEEEECCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEE TIRQNGYVIYQSYVPPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE EEECCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHC GRVKYDLVAGDFRSGNSQQSSLFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGQNL CCEEEEEEECCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCC GDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD CCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEEEECCCCEEEEHH VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGNYGSLYLSGSQQ HHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCC NYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGISGADRILAFNMSVPFSVLTGRRY CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHCCCHH ARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSTNGHSGSASAS HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCE WQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHTDGITFSQPLGDTNVLIKAPGAKGVRIE EEEEEEEEECCCCCCCCCCCCCEEECCCEEECCCCEEECCCCCCCEEEEECCCCCCEEEE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDT CCCCCCCCCCCEEECCCHHHEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEEECCC RIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKN CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCC ARCIAPYALAEDSLKQAITIASATCIRPSS CEEEECHHHHHHHHHHHHHHHHEEEECCCC >Mature Secondary Structure MKKTTWFAGRFPGYVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEK CCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHC GNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGAGDKSGGLMPCFTPERIKRLGVNTAVF CCCCCCCEEEEEEEECCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEE PVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPA ECCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCHHHHHHCCCCCCCHHHHCCCCCE ALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWSYSKGDGYHSQRWNNIGTWVQ EEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCHHCCCHHHHHHH RAIIPLKSELVMGDSHTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKL HHHCCCCCEEEECCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEE TIRQNGYVIYQSYVPPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQRE EEECCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHC GRVKYDLVAGDFRSGNSQQSSLFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGQNL CCEEEEEEECCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCHHHHCCEEEEEEECCCCC GDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD CCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEEEECCCCEEEEHH VAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGNYGSLYLSGSQQ HHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCC NYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGISGADRILAFNMSVPFSVLTGRRY CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHCCCHH ARDTILDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSTNGHSGSASAS HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCE WQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHTDGITFSQPLGDTNVLIKAPGAKGVRIE EEEEEEEEECCCCCCCCCCCCCEEECCCEEECCCCEEECCCCCCCEEEEECCCCCCEEEE NQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDT CCCCCCCCCCCEEECCCHHHEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEEECCC RIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKN CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCC ARCIAPYALAEDSLKQAITIASATCIRPSS CEEEECHHHHHHHHHHHHHHHHEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609 [H]