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The map label for this gene is fimW [H]

Identifier: 29142703

GI number: 29142703

Start: 2375841

End: 2376437

Strand: Direct

Name: fimW [H]

Synonym: t2311

Alternate gene names: 29142703

Gene position: 2375841-2376437 (Clockwise)

Preceding gene: 29142702

Following gene: 29142704

Centisome position: 49.58

GC content: 41.37

Gene sequence:

>597_bases
ATGCTGAGTATCGCTATTAAGGAACAAAACAGTCACTTTGAGCATGGTTTGAAAATCATCATGACGCGTCTGGCGAATCA
ATGGCAGCAGAAAATTGACTTTCTGCCGCCAGAAGAGATAGATAATGCCGATATCGCTTTCCTGACCCTGGATGATGATT
GGTTCAGCGCAGGCTGTTACCAGATACCTATGCATACTCAACATCAGCTACGGGTAATTATTTGTAATAAATGCGATAAA
GAAAAGCTCATGTTCAGACCATGTCTGTATATGCTGCCGCATATTTATCGGGAAGATGATGTTGAAGAAATTACCCGGAA
AATGATATTGATCTTACATAAGCGAGCGCTTCGACATAGCGTCCCTTCTGGCATCTGCCACTACTGCACGACTCGCCATT
TTTCAGTAACAGAACGTCACTTATTAAAACTGATCGCCAGCGGTTATCATTTAAGCGAAACGGCCGCTTTACTTTCACTT
TCTGAAGAGCAGACAAAGTCACTCCGCCGGAGCATTATGCGAAAATTACATGTTAAAACGGAGCAGCAGTTTTTAAAATA
TATTAGAGTTAACCTTCATTTCTTACTCAGTAAGTAA

Upstream 100 bases:

>100_bases
CAGCACGCATAAAGTGGGAATTAAAGCCGCCAGTATTTAGATAATCAATCAGTTTCTTTAATATTTCACCATGACTCACC
TGCCGTGTAGGATATTTTTT

Downstream 100 bases:

>100_bases
ACTCACTTAACTTTTTACAAAGCTTACGAAATATCTCACCAATAATTAAGTAACGATACCTACAGGCATTTTTTTAACGC
TGCCACAATGATACCCATAA

Product: fimbriae w protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLTLDDDWFSAGCYQIPMHTQHQLRVIICNKCDK
EKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSL
SEEQTKSLRRSIMRKLHVKTEQQFLKYIRVNLHFLLSK

Sequences:

>Translated_198_residues
MLSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLTLDDDWFSAGCYQIPMHTQHQLRVIICNKCDK
EKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSL
SEEQTKSLRRSIMRKLHVKTEQQFLKYIRVNLHFLLSK
>Mature_198_residues
MLSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLTLDDDWFSAGCYQIPMHTQHQLRVIICNKCDK
EKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSL
SEEQTKSLRRSIMRKLHVKTEQQFLKYIRVNLHFLLSK

Specific function: Unknown

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23426; Mature: 23426

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLTLDDDWFSAGCY
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCE
QIPMHTQHQLRVIICNKCDKEKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHS
ECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
VPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSLSEEQTKSLRRSIMRKLHVKT
CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EQQFLKYIRVNLHFLLSK
HHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MLSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLTLDDDWFSAGCY
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCE
QIPMHTQHQLRVIICNKCDKEKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRALRHS
ECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
VPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSLSEEQTKSLRRSIMRKLHVKT
CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EQQFLKYIRVNLHFLLSK
HHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]