Click here to switch to the map view.

The map label for this gene is ybdN [H]

Identifier: 29142663

GI number: 29142663

Start: 2329106

End: 2330341

Strand: Direct

Name: ybdN [H]

Synonym: t2264

Alternate gene names: 29142663

Gene position: 2329106-2330341 (Clockwise)

Preceding gene: 29142662

Following gene: 29142664

Centisome position: 48.6

GC content: 49.43

Gene sequence:

>1236_bases
ATGTCGGTTTATAAAGTTCCGCTTGAGCAAAATGTTCTGGAAGCGGCTCAAGAGCGTATAACATGGCCCCTGGAAACTTT
ACCCCGGGTCTGCGTCTCATTTTCTGGTGGTAAAGATTCAGGACTTATGCTGCACCTGACGGCAACGTTGGCGCGCAAAA
TGAATAAAAAGATCCACGTTCTTTTCATTGACTGGGAAGCGCAATTCTCCTGTACTATCGCTTATATTGAATCGTTACGT
GAATACTACGCGGACGTTATTGAGCGTTTTTATTGGGTCGCATTACCCTTAACCACACAAAATTCCCTTTCACAATACCA
GCCGGAGTGGCAGTGTTGGCAGCCGGGAACCGACTGGGTACGACAACCGCCAGAAGATGCGATTACCGATCCGGCCTTTT
TTTCCTTTTATCAACACGGCATGACTTTTGAACAGTTCGTTCGCGATTTTGCCGACTGGTTTTCAGAAAAGCGCCCTGCC
GCTATGCTGGTCGGTATTCGTTCCGACGAATCCTATAACCGGTTTGTCGCTATCGCTAACTCGCATAAGCTGCGCTTTGC
CGACGATAAGCCCTGGACCACGTTGGCCCCCAAGGGGCACACCTGGTATATCTACCCCATCTATGACTGGAAAACCGCAG
ATATCTGGACCTGGTTCGCCAAAACAGGTAAATCATGTAACCCCTTGTATAATTTGATGTATCAGGCTGGCGTACCGGTC
CGTTACATGCGTATTTGCGAACCATTCGGCCCGGAACAACGGCAGGGGTTATGGCTGTATCATGTTATCGAACCTGAGCG
CTGGGCGGCCATGTACGCCAGAGTCAGCGGCGTACTCAGCGGAGGAATATACGCCGGGCAGGACAGCCATTTTTACGGCC
ACCGGAAAATTTTAAAACCCGATCACCTTAACTGGGAGGAGTACGCGCTGCTCCTGCTACACAGTATGCCTGAAGTCACT
GCCGAACATTACCGTAATAAAATCGCCGTTTATTTGCAGTGGTATAAGAAAAAAGGCATGAACACCATTCCACAGACGCA
GCAGGGCGATATCGGATCGCGGGATATTCCGTCATGGCGACGGATCTGCAAAGTATTACTGAACAATGATTACTGGTGCC
GGGCGCTGTCATTCAGTCCGACAAAACCTAAGAGTTACCAGCGTTATAACGAACGCATGAAAGCTAAACGCCAGGAATGG
GGGATCTTATGCAACACCGACTCACAACCGAAATAA

Upstream 100 bases:

>100_bases
AGAGAATATAATAAGACATTGCAAGTTCATATAATCAGATTATCCTTTATGTTAATTATTGCGAATATATTGTAGTTAAC
ACATTGGAGACTATCCAGAG

Downstream 100 bases:

>100_bases
CTCACTTTCTCTCTGGACTGCCTGAAGAGGAAAGGATCGCCGCCATTAATGAATTTAGAAGGGCGATACATAACGTTAGT
CCTTTTCGCGATGAGCCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSVYKVPLEQNVLEAAQERITWPLETLPRVCVSFSGGKDSGLMLHLTATLARKMNKKIHVLFIDWEAQFSCTIAYIESLR
EYYADVIERFYWVALPLTTQNSLSQYQPEWQCWQPGTDWVRQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWFSEKRPA
AMLVGIRSDESYNRFVAIANSHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTWFAKTGKSCNPLYNLMYQAGVPV
RYMRICEPFGPEQRQGLWLYHVIEPERWAAMYARVSGVLSGGIYAGQDSHFYGHRKILKPDHLNWEEYALLLLHSMPEVT
AEHYRNKIAVYLQWYKKKGMNTIPQTQQGDIGSRDIPSWRRICKVLLNNDYWCRALSFSPTKPKSYQRYNERMKAKRQEW
GILCNTDSQPK

Sequences:

>Translated_411_residues
MSVYKVPLEQNVLEAAQERITWPLETLPRVCVSFSGGKDSGLMLHLTATLARKMNKKIHVLFIDWEAQFSCTIAYIESLR
EYYADVIERFYWVALPLTTQNSLSQYQPEWQCWQPGTDWVRQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWFSEKRPA
AMLVGIRSDESYNRFVAIANSHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTWFAKTGKSCNPLYNLMYQAGVPV
RYMRICEPFGPEQRQGLWLYHVIEPERWAAMYARVSGVLSGGIYAGQDSHFYGHRKILKPDHLNWEEYALLLLHSMPEVT
AEHYRNKIAVYLQWYKKKGMNTIPQTQQGDIGSRDIPSWRRICKVLLNNDYWCRALSFSPTKPKSYQRYNERMKAKRQEW
GILCNTDSQPK
>Mature_410_residues
SVYKVPLEQNVLEAAQERITWPLETLPRVCVSFSGGKDSGLMLHLTATLARKMNKKIHVLFIDWEAQFSCTIAYIESLRE
YYADVIERFYWVALPLTTQNSLSQYQPEWQCWQPGTDWVRQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWFSEKRPAA
MLVGIRSDESYNRFVAIANSHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTWFAKTGKSCNPLYNLMYQAGVPVR
YMRICEPFGPEQRQGLWLYHVIEPERWAAMYARVSGVLSGGIYAGQDSHFYGHRKILKPDHLNWEEYALLLLHSMPEVTA
EHYRNKIAVYLQWYKKKGMNTIPQTQQGDIGSRDIPSWRRICKVLLNNDYWCRALSFSPTKPKSYQRYNERMKAKRQEWG
ILCNTDSQPK

Specific function: Unknown

COG id: COG3969

COG function: function code R; Predicted phosphoadenosine phosphosulfate sulfotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786818, Length=407, Percent_Identity=82.3095823095823, Blast_Score=721, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021845
- InterPro:   IPR002500
- InterPro:   IPR014729 [H]

Pfam domain/function: PF11922 DUF3440; PF01507 PAPS_reduct [H]

EC number: NA

Molecular weight: Translated: 48405; Mature: 48274

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVYKVPLEQNVLEAAQERITWPLETLPRVCVSFSGGKDSGLMLHLTATLARKMNKKIHV
CCEEECCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCEEEEEHHHHHHHCCCEEEE
LFIDWEAQFSCTIAYIESLREYYADVIERFYWVALPLTTQNSLSQYQPEWQCWQPGTDWV
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHCCCCCEEECCCCHHH
RQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWFSEKRPAAMLVGIRSDESYNRFVAIAN
CCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEC
SHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTWFAKTGKSCNPLYNLMYQAGVPV
CCEEEECCCCCCEEECCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHCCCCE
RYMRICEPFGPEQRQGLWLYHVIEPERWAAMYARVSGVLSGGIYAGQDSHFYGHRKILKP
EHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC
DHLNWEEYALLLLHSMPEVTAEHYRNKIAVYLQWYKKKGMNTIPQTQQGDIGSRDIPSWR
CCCCHHHHHHHHHHCCHHHHHHHHHCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHHH
RICKVLLNNDYWCRALSFSPTKPKSYQRYNERMKAKRQEWGILCNTDSQPK
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCC
>Mature Secondary Structure 
SVYKVPLEQNVLEAAQERITWPLETLPRVCVSFSGGKDSGLMLHLTATLARKMNKKIHV
CEEECCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCEEEEEHHHHHHHCCCEEEE
LFIDWEAQFSCTIAYIESLREYYADVIERFYWVALPLTTQNSLSQYQPEWQCWQPGTDWV
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHCCCCCEEECCCCHHH
RQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWFSEKRPAAMLVGIRSDESYNRFVAIAN
CCCCHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEC
SHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTWFAKTGKSCNPLYNLMYQAGVPV
CCEEEECCCCCCEEECCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHCCCCE
RYMRICEPFGPEQRQGLWLYHVIEPERWAAMYARVSGVLSGGIYAGQDSHFYGHRKILKP
EHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC
DHLNWEEYALLLLHSMPEVTAEHYRNKIAVYLQWYKKKGMNTIPQTQQGDIGSRDIPSWR
CCCCHHHHHHHHHHCCHHHHHHHHHCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHHH
RICKVLLNNDYWCRALSFSPTKPKSYQRYNERMKAKRQEWGILCNTDSQPK
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]