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The map label for this gene is ybdO [H]

Identifier: 29142662

GI number: 29142662

Start: 2328038

End: 2328940

Strand: Direct

Name: ybdO [H]

Synonym: t2262

Alternate gene names: 29142662

Gene position: 2328038-2328940 (Clockwise)

Preceding gene: 29142661

Following gene: 29142663

Centisome position: 48.58

GC content: 38.98

Gene sequence:

>903_bases
ATGGCTAACCTTTACGACCTTAAAAAATTTGATCTTAACCTGTTGGTTATATTTGAATGTATTTATCAACATTTAAGCAT
TAGCAAAGCAGCGGAAACACTCTATATTACACCTTCTGCCGTCAGTCAGTCATTGCAACGCCTGCGCACGCAATTCAATG
ATCCTCTATTTATTCGCTCAGGCAAAGGAATTACGCCTACCGTAACAGGCATTAATTTACATTATCATTTAGAAAATAAC
CTTAACAGCCTGGAACAAACTATTAATATAATGAATCAGTCCAGTCTGAAGAAAAAATTTATTATCTACAGCCCACAGCT
GTTGATCACCCAATATGCGATGAAATTAGTTAAATATATCCGCAAAGATCCACAGGTTGAAATTGAACATCACGACATTT
TGACCACTGACGAACTGCCTGAAGATCTGCTTGCCTACCGCAAAGCAGATGTTGTGGTTTCAATGGCCCCACTTAATAAT
CGTTCTATTGTTTGTACTCACTTTAATAGGCTAGAATGTATCCTGGTTTGCAGTGAAAATCATCCCCGACTAGGCGACAC
CGCCACTATCGATGAAATTCTACAAGAGTCATTTACGCAACTCGTCTCCCGGGCAACCGGTATGAAAGAGTATCATTCAC
TTATAGATGATGTGCTGGGGGAGAGAATAATTGGTTTAAGAAGCAAATCGGTGATGACTATCGCCAACTCCATCAGCTCC
ACGGAGCTTATTGGTTTTTTACCACAAACATTTGTTGACTATTACTCTTCCTCTATCAAACTTAAAAAAGTCGCCACACC
TTTTACCATTGCTCCTATACAATTCTATCTTATGTACAATAGAGCTTCGCTGAATAATAGCGGATTTGCTGAGCTCATTG
AGTACATCACAAAAAAGCGTTAA

Upstream 100 bases:

>100_bases
TAAATAAACTCTACATTAAGTTTAATAAACATAATTCTGGTAAATTATTGAGATTAAGTCATAATCATGGAAGATACCAT
GATAATGCCGGGAAGATACT

Downstream 100 bases:

>100_bases
TAAGGAGATCAGAGAACGAGTAATAATATAAATTAAGTGTATACATTCGTAGAATGTATTTACTTAGAGAATATAATAAG
ACATTGCAAGTTCATATAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENN
LNSLEQTINIMNQSSLKKKFIIYSPQLLITQYAMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADVVVSMAPLNN
RSIVCTHFNRLECILVCSENHPRLGDTATIDEILQESFTQLVSRATGMKEYHSLIDDVLGERIIGLRSKSVMTIANSISS
TELIGFLPQTFVDYYSSSIKLKKVATPFTIAPIQFYLMYNRASLNNSGFAELIEYITKKR

Sequences:

>Translated_300_residues
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENN
LNSLEQTINIMNQSSLKKKFIIYSPQLLITQYAMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADVVVSMAPLNN
RSIVCTHFNRLECILVCSENHPRLGDTATIDEILQESFTQLVSRATGMKEYHSLIDDVLGERIIGLRSKSVMTIANSISS
TELIGFLPQTFVDYYSSSIKLKKVATPFTIAPIQFYLMYNRASLNNSGFAELIEYITKKR
>Mature_299_residues
ANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENNL
NSLEQTINIMNQSSLKKKFIIYSPQLLITQYAMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADVVVSMAPLNNR
SIVCTHFNRLECILVCSENHPRLGDTATIDEILQESFTQLVSRATGMKEYHSLIDDVLGERIIGLRSKSVMTIANSISST
ELIGFLPQTFVDYYSSSIKLKKVATPFTIAPIQFYLMYNRASLNNSGFAELIEYITKKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=298, Percent_Identity=54.0268456375839, Blast_Score=332, Evalue=1e-92,
Organism=Escherichia coli, GI87081766, Length=295, Percent_Identity=27.7966101694915, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87081684, Length=295, Percent_Identity=22.3728813559322, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790147, Length=302, Percent_Identity=24.8344370860927, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34235; Mature: 34104

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRS
CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFIIYSPQLLITQYAMKLVKYI
CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHH
RKDPQVEIEHHDILTTDELPEDLLAYRKADVVVSMAPLNNRSIVCTHFNRLECILVCSEN
HCCCCEEEECCCCCCCCCCHHHHHHHHHHCEEEEECCCCCCEEEEEECCCEEEEEEECCC
HPRLGDTATIDEILQESFTQLVSRATGMKEYHSLIDDVLGERIIGLRSKSVMTIANSISS
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
TELIGFLPQTFVDYYSSSIKLKKVATPFTIAPIQFYLMYNRASLNNSGFAELIEYITKKR
HHHHHHHHHHHHHHHCCCEEEEECCCCEEECCEEEEEEEECCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
ANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRTQFNDPLFIRS
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCCEEEEC
GKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFIIYSPQLLITQYAMKLVKYI
CCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHH
RKDPQVEIEHHDILTTDELPEDLLAYRKADVVVSMAPLNNRSIVCTHFNRLECILVCSEN
HCCCCEEEECCCCCCCCCCHHHHHHHHHHCEEEEECCCCCCEEEEEECCCEEEEEEECCC
HPRLGDTATIDEILQESFTQLVSRATGMKEYHSLIDDVLGERIIGLRSKSVMTIANSISS
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
TELIGFLPQTFVDYYSSSIKLKKVATPFTIAPIQFYLMYNRASLNNSGFAELIEYITKKR
HHHHHHHHHHHHHHHCCCEEEEECCCCEEECCEEEEEEEECCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]