Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 29142630

GI number: 29142630

Start: 2295425

End: 2296558

Strand: Direct

Name: rlpA [H]

Synonym: t2229

Alternate gene names: 29142630

Gene position: 2295425-2296558 (Clockwise)

Preceding gene: 29142629

Following gene: 29142631

Centisome position: 47.9

GC content: 60.67

Gene sequence:

>1134_bases
ATGCATAAGCAGTTGCCTGTAATCTGCGTCGCGGCAGGGATAGTACTACTCGCGGCATGTACTAATGACGGCGGTCAGCA
GCAAACCACCGTCGCGCCGCAACCTGCGGTATGTAATGGTCCGACTGTGGAAATCAGCGGAGCGGAACCGCGTTATGAAC
CTCTGAATCCGACCGCAAACCAGGATTATCAGCGTGACGGTAAAAGTTATAAAATCGTTCAGGACCCGTCCCGCTTTAGC
CAGGCTGGCCTGGCCGCTATTTATGATGCGGAACCCGGCAGTAATTTAACCGCCTCCGGGGAGATGTTCGATCCGATGCA
GCTTACCGCCGCCCATCCGACACTGCCTATCCCCAGCTATGCGCGAATCACCAACCTGGCCAACGGTCGCATGATCGTCG
TGCGTATTAACGATCGCGGCCTCTATGGCACCGATCGGGTCATCTCCCTGTCCCGCGCAGCGGCGGATCGTCTGAATACC
TCGAATAATACTAAAGTACGGATTGACCCCATTATCGTGGCGCCGGATGGTTCGCTCTCCGGCCCGGGGATGGCCTGTAC
GACGGTGGCGAAACAGACCTACGCTCTGCCCCCGCGCCCTGATTTAAGCGGCGGCATGGGAAGCGCCTCTTCAGCGCCTG
CGCAACCGCAAGGCGACGTTCTTCCGGTCAGTAATTCCACGTTGAAAAGTGACGATACCACCGGTGCGCCGGTGAGCAGC
AGCGGCTTCCTCGGCGCGCCGACCACGCTGGCGCCTGGCGTGCTGGAGGGTAATGAACCGACGCCGGCGCCACAGACAGC
GCCGGTTTCCGCGCCGGTGACGGCTCCAGCGACTGCGACGCCGGTGAGCGCGCCTGCCGCCGCAGCCCCGGTATCTGCCC
CGGTGAGCGCGCCTGCCGCCGCGGCGAGCGGTCGTTTCGTCGTCCAAGTCGGCGCCGTCAGCGATCAAACGCGTGCGCAG
CAGTACCAACAGCGTTTAAGCCAGCAGTTCAGCGTACCAGGACGCGTAATACAAAACGGCGCGGTCTGGCGTATTCAACT
GGGGCCTTTTGCCAGTAAAGCCGAAGCCAGCGCGTTACAGCAACGTTTGCAAACAGAAGCACAATTACAGTCCTTTATCG
CCAGCGCGCAGTAA

Upstream 100 bases:

>100_bases
GGGGGCTCCGCACTGATTGTGCTGATGGCCGGGTTCGGGATTGTGATGTCGATCCACACCCACAGAAAAATGTTGTCGAA
AAGCGTATAAGGGGTGCGCA

Downstream 100 bases:

>100_bases
CCGATTGCAGGTATCTGTACTGTCAATTTCTGTAAATGACATTAACAAAGTCACGCGGAAAGTCAGATGCCTGCCAGTTA
TGCTTTTGCTATAGTAGGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MHKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGLYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLEGNEPTPAPQTAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQ
QYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ

Sequences:

>Translated_377_residues
MHKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGLYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLEGNEPTPAPQTAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQ
QYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ
>Mature_377_residues
MHKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFS
QAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGLYGTDRVISLSRAAADRLNT
SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
SGFLGAPTTLAPGVLEGNEPTPAPQTAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQ
QYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=377, Percent_Identity=81.1671087533157, Blast_Score=559, Evalue=1e-160,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 38769; Mature: 38769

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTAN
CCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
QDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSY
CCHHHCCCCEEEEECHHHHHHCCEEEEEECCCCCCCEECCCCCCCEEEEECCCCCCCCCH
ARITNLANGRMIVVRINDRGLYGTDRVISLSRAAADRLNTSNNTKVRIDPIIVAPDGSLS
HHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
GPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
SGFLGAPTTLAPGVLEGNEPTPAPQTAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAA
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
AASGRFVVQVGAVSDQTRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQ
HCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCHHHHHHHH
QRLQTEAQLQSFIASAQ
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVEISGAEPRYEPLNPTAN
CCCCCCHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
QDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEMFDPMQLTAAHPTLPIPSY
CCHHHCCCCEEEEECHHHHHHCCEEEEEECCCCCCCEECCCCCCCEEEEECCCCCCCCCH
ARITNLANGRMIVVRINDRGLYGTDRVISLSRAAADRLNTSNNTKVRIDPIIVAPDGSLS
HHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCC
GPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQGDVLPVSNSTLKSDDTTGAPVSS
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
SGFLGAPTTLAPGVLEGNEPTPAPQTAPVSAPVTAPATATPVSAPAAAAPVSAPVSAPAA
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
AASGRFVVQVGAVSDQTRAQQYQQRLSQQFSVPGRVIQNGAVWRIQLGPFASKAEASALQ
HCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCHHHHHHHH
QRLQTEAQLQSFIASAQ
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]