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The map label for this gene is ybfM [H]

Identifier: 29142596

GI number: 29142596

Start: 2254145

End: 2255551

Strand: Reverse

Name: ybfM [H]

Synonym: t2188

Alternate gene names: 29142596

Gene position: 2255551-2254145 (Counterclockwise)

Preceding gene: 29142597

Following gene: 29142595

Centisome position: 47.07

GC content: 51.74

Gene sequence:

>1407_bases
ATGCGTACGTTTAGTGGCAAACGTAGTACGCTGGCTCTGGCTATCGCCGGTATCACAGCAATGTCGGGGTGGATCGTTGT
TCCGCAGGCGCAAGCCTCCGGCTTTTTCGACGACTCCACGTTAACGGGCGGCATCTATTATTGGCAGCGTGAACGCGATC
GCAAAGATGTGACCGACGGCGACAAATATAAAACTAACCTTTCTCATGCGACCTGGAACGCTAACCTGGATTTTCAGTCT
GGTTACGCTGCGGATATGTTCGGTCTGGATATCGCGGCGTTTACCGCGATTGAAATGGCAGAAAACGGCGACAGCGGTCA
TCCAAACGAAATTGCCTTCTCGAAAAAGAATAAAGGCTACGACGAAGACTATTCCGGCGATAAGAGCGGTATCAGTCTTT
ATAAAGCCGCCGCGAAATTTAAATATGGCCCGGTCTGGGCGCGCGCCGGTTATATTCAGCCTACCGGTCAGACGCTGTTA
GCGCCGCACTGGAGTTTTATGCCGGGTACCTATCAGGGTGCGGAAGCCGGCGCCAGTTTTGACTATGGCGATGCGGGCGC
GTTAAGTTTTTCCTACATGTGGACTAACGAATATAAAGCGCCGTGGCATACCGAAATGGATAAGTTTTATCAGGCGGATA
AAAAAACCAATGTAGACTATCTCCACTCCATCGGCGCGAAGTACGACTTCAAAAATGATCTGGTGCTGGAAGCGGCGTTT
GGTCAGTCCGAAGGCTATGTCGATCAATATTTCGCAAAGGCCAGCTATAAATTTGATTTAGGCGGCAATCCGTTCACCAC
CAGTTACCAGTTCTACGGCGCGCGCGACAAAGTAGACGATCGCAGCGTGAATGACATTTACGACGGTACGGCCTGGCTGC
AGGCGTTGACCTTCGGCTACAAAGTCGCGGAAGTGGTTGACCTGCGTCTGGAGGGCACCTGGGTGAAAGCGGACGGTCAG
CAGGGCTATTTTCTGCAACGTATGACGCCAACCTACGCCTCTTCAAACGGTCGTCTGGATATCTGGTGGGATAACCGCTC
CGACTTTAACGCTAACGGTGAAAAGGCGGTTTTCTTCGGCGCGATGTATGACCTGAAAAACTGGAATCTGCCGGGCTGGG
CTGTGGGCGCGTCTTACGTTTACGCCTGGGATGCTAAACCGGCAACCTGGCAAAGTAACCCGGATGCTTACTACGACAAA
AACCGCACTATCGAAGAGTCCTCATACAGTCTGGATGCGGTCTATACCCTGCAGGAGGGGCGTGCCAAAGGCACCATGTT
CAAACTGCACTTCACCGAATATGACAACCACTCCAATATTCCAAGCTGGGGCGGTGGTTACGGCAACATCTTCCAGGATG
AACGTGACGTGAAATTTATCGTTATTGCGCCATTCACTATTTTCTGA

Upstream 100 bases:

>100_bases
TTAACGTAGTAAATGAGGTTTCTCAGCGCTACTTTTTATTTTTATTTTTTCGCTGTTCGCTTTTGTCGGCAGCAATTTAT
ACGTCAAAGAGGATTAACTT

Downstream 100 bases:

>100_bases
TGTCAGATGCGGCAGGCTGCCGGTCTGCCGCGCTGTTGAGGAACGACCTATGAAAAAAATTTTACTCATCGCCAGCATGA
CCGCCGGTTTGACGGCCTGC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF

Sequences:

>Translated_468_residues
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF
>Mature_468_residues
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=468, Percent_Identity=91.2393162393162, Blast_Score=894, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 52664; Mature: 52664

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDG
CCCCCCCCCEEEEEEECHHHHCCEEEEECHHCCCCCCCCCEECCEEEEECCCCCCCCCCC
DKYKTNLSHATWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGY
CCEEECCCEEEEECCCCCCCCCCHHHHCCHHHHHEEEEHHCCCCCCCCCCEEEECCCCCC
DEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGASF
CCCCCCCCCCHHHHHHHHHCCCCCEEEECCEECCCCCEEECCCCCCCCCCCCCCCCCCCC
DYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEEEC
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGY
CCCCCCHHHHHHHCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHCHHHHHHHHHHCC
KVAEVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG
EEEEEEEEEEECEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEE
AMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDKNRTIEESSYSLDAVYTLQEG
EEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCCCEECCCCEECCCCCCEEEEEEEECC
RAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEC
>Mature Secondary Structure
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDG
CCCCCCCCCEEEEEEECHHHHCCEEEEECHHCCCCCCCCCEECCEEEEECCCCCCCCCCC
DKYKTNLSHATWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGY
CCEEECCCEEEEECCCCCCCCCCHHHHCCHHHHHEEEEHHCCCCCCCCCCEEEECCCCCC
DEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGASF
CCCCCCCCCCHHHHHHHHHCCCCCEEEECCEECCCCCEEECCCCCCCCCCCCCCCCCCCC
DYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEEEC
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGY
CCCCCCHHHHHHHCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHCHHHHHHHHHHCC
KVAEVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG
EEEEEEEEEEECEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEE
AMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDKNRTIEESSYSLDAVYTLQEG
EEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCCCEECCCCEECCCCCCEEEEEEEECC
RAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]