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The map label for this gene is seqA [H]

Identifier: 29142586

GI number: 29142586

Start: 2245352

End: 2245894

Strand: Reverse

Name: seqA [H]

Synonym: t2178

Alternate gene names: 29142586

Gene position: 2245894-2245352 (Counterclockwise)

Preceding gene: 29142595

Following gene: 29142585

Centisome position: 46.87

GC content: 51.01

Gene sequence:

>543_bases
ATGAAAACGATTGAAGTTGATGATGAACTCTATAGCTATATTGCCAGCCACACCAAGCATATCGGCGAGAGCGCATCCGA
CATTTTACGGCGTATGTTGAAGTTTTCCGCCACGACACAGCCAACGGCTTCAGCGGTGAAGGGGACGCCTGCGGCGCAAC
CCGTTGCCGAAGCGAAACCGGTTAACCCGGTAAAAGACAAAGTTCGCGCGATGCGTGAGCTGTTGTTGTCTGATGAATAT
GCCGAGCAGAAAAAAGCGGTCAACCGCTTTATGCTGATTCTGACTACACTCTATTCACTGGATCACCACGCGTTTGCGGA
GGCGACGGAGTCGTTGCATGGCCGCACGCGCGTCTATTTTGCGGCGGATGAACAAACGCTGCTGAAAAATGGGAATCAAA
CTAAACCTAAGCACGTTCCCGGCACGCCGTACTGGGTGATCACCAACACCAACACCGGCCGTAAATGCAGCATGATCGAA
CACATCATGCAGTCAATGCAATTCCCGGCGGAATTGATTGAAAAGGTTTGCGGAACAATTTAA

Upstream 100 bases:

>100_bases
CGAGTTTTTTTGTCAGCCGGGCTTAACGCTATCCGCTGTTGGGATTTGTTCCTATAATCCCAATGACTTGTATTCAGCAA
AGACATCGCACTGGATTAAG

Downstream 100 bases:

>100_bases
TCCTTGCATTAGAAGGACCAGGCAATGGCAATCCACAACCGCGCAGGACAACCCGCGCAACAGAGTGATTTGATTAACGT
CGCCCAACTGACAGCGCAGT

Product: replication initiation regulator SeqA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTASAVKGTPAAQPVAEAKPVNPVKDKVRAMRELLLSDEY
AEQKKAVNRFMLILTTLYSLDHHAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIE
HIMQSMQFPAELIEKVCGTI

Sequences:

>Translated_180_residues
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTASAVKGTPAAQPVAEAKPVNPVKDKVRAMRELLLSDEY
AEQKKAVNRFMLILTTLYSLDHHAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIE
HIMQSMQFPAELIEKVCGTI
>Mature_180_residues
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTASAVKGTPAAQPVAEAKPVNPVKDKVRAMRELLLSDEY
AEQKKAVNRFMLILTTLYSLDHHAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIE
HIMQSMQFPAELIEKVCGTI

Specific function: Negative regulator of replication initiation. Required for sequestration, a process that blocks secondary initiation events. Could block the allosteric transition of dnaA from an inactive form to an active form. Binds hemimethylated oriC. This process has

COG id: COG3057

COG function: function code L; Negative regulator of replication initiationR

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786903, Length=181, Percent_Identity=87.8453038674033, Blast_Score=333, Evalue=3e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005621
- InterPro:   IPR010985 [H]

Pfam domain/function: PF03925 SeqA [H]

EC number: NA

Molecular weight: Translated: 20149; Mature: 20149

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTASAVKGTPAAQPVAEAKP
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHCCC
VNPVKDKVRAMRELLLSDEYAEQKKAVNRFMLILTTLYSLDHHAFAEATESLHGRTRVYF
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
ECCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTASAVKGTPAAQPVAEAKP
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHCCC
VNPVKDKVRAMRELLLSDEYAEQKKAVNRFMLILTTLYSLDHHAFAEATESLHGRTRVYF
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
ECCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]