Definition Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome.
Accession NC_004631
Length 4,791,961

Click here to switch to the map view.

The map label for this gene is yliC

Identifier: 29142460

GI number: 29142460

Start: 2096219

End: 2097139

Strand: Reverse

Name: yliC

Synonym: t2039

Alternate gene names: 29142460

Gene position: 2097139-2096219 (Counterclockwise)

Preceding gene: 29142461

Following gene: 29142459

Centisome position: 43.76

GC content: 54.72

Gene sequence:

>921_bases
ATGCTTAACTATGTTCTCAAGCGCCTGCTGGGATTAATTCCTACGCTGTTGATTGTGGCAGTGCTGGTGTTTTTATTTGT
TCATTTGTTGCCCGGCGACCCGGCGCGGCTGATAGCCGGACCGGAAGCCGACGCGCAGGTGATAGCGCTGGTTCGTCAGC
AGCTGGGGCTTGATCAGCCGCTTCATGTCCAGTTTTGGCATTACATCACCCATGTTTTACAAGGCGATTTCGGGACGTCA
ATGGTTTCCCGCCGCCCGGTTTCTGAGGAGATCGCCAGCCGCTTTTTGCCGACGCTGTGGCTGACGATAACCAGTATGAT
ATGGGCGGTGTTGTTTGGCATGGCGATCGGCATCGCCGCCGCCGTGTGGCGTAATCGCTGGCCTGACCGGGTAGGAATGA
CGCTTGCCGTGACCGGCATTTCTTTCCCGGCTTTTGCGCTGGGAATGTTGTTAATGCAGATTTTTTCCGTGGATCTGGGC
TGGCTACCGACCGTGGGGGCGGATAGCTGGCAACATTATATTTTACCCTCCCTGACGCTTGGCGCGGCGGTGGCATCAGT
CATGGCGCGTTTTACGCGCTCCTCGTTTGTCGATGTGCTGAGCGAGGATTACATGAGGACCGCGCGGGCGAAAGGCGTCA
GTGAAACGTGGGTGGTGTTAAAACATGGCCTGCGCAATGCAATGATCCCGGTCGTCACCATGATGGGACTGCAATTTGGC
TTTCTGCTTGGCGGATCGATCGTCGTCGAAAAAGTGTTTAACTGGCCGGGGCTTGGGCGATTACTGGTCGACTCCGTCGA
CATGCGCGACTACCCCGTGATTCAGGCAGAAGTGCTGCTGTTTTCTCTGGAATTTATTCTTATCAACTTAGTGGTGGATG
TCCTCTATGCCGCCATTAATCCGGCTATCAGGTATAAGTAA

Upstream 100 bases:

>100_bases
GGATACCGGTTTCAGCTTTGACGATGCGGATTTGAAGTAAGTAATGCGATGGGGCTGGATGGCGCGCGCGTTGTCCGCCA
TCCGGTAAAAGGTTCGTGTG

Downstream 100 bases:

>100_bases
GGATGCGATTATTTAACTGGCGCCGTCAGGCGATTTTACATGCTATGCCGGTGGTAAAACCCGACCAGATACGCACGCCG
TGGCGGGAGTTCTGGCGTCG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTS
MVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAAAVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLG
WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG
FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK

Sequences:

>Translated_306_residues
MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTS
MVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAAAVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLG
WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG
FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK
>Mature_306_residues
MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTS
MVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAAAVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLG
WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG
FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK

Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787053, Length=306, Percent_Identity=90.1960784313726, Blast_Score=566, Evalue=1e-163,
Organism=Escherichia coli, GI1789965, Length=342, Percent_Identity=43.859649122807, Blast_Score=265, Evalue=3e-72,
Organism=Escherichia coli, GI1789888, Length=309, Percent_Identity=41.1003236245955, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=41.7177914110429, Blast_Score=211, Evalue=7e-56,
Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=35.7142857142857, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=31.1355311355311, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=26.1707988980716, Blast_Score=118, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GSIC_SALCH (Q57RB0)

Other databases:

- EMBL:   AE017220
- GenomeReviews:   AE017220_GR
- KEGG:   sec:SC0845
- HOGENOM:   HBG724229
- OMA:   INPTIRY
- ProtClustDB:   PRK15081
- BioCyc:   SENT321314:SCH_0845-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 33962; Mature: 33962

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xdf12b6c)-; HASH(0xf69d334)-; HASH(0xf0d1608)-; HASH(0xeb21de8)-; HASH(0xfbd24e4)-; HASH(0xee34c6c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHHHHCCCCC
LHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAA
HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLGWLPTVGADSWQHYILPSLTL
HHHHCCCCCHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
GAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAIN
HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAIRYK
HHHCCH
>Mature Secondary Structure
MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHHHHCCCCC
LHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAA
HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLGWLPTVGADSWQHYILPSLTL
HHHHCCCCCHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
GAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAIN
HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAIRYK
HHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA