Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
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Accession | NC_004631 |
Length | 4,791,961 |
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The map label for this gene is yliC
Identifier: 29142460
GI number: 29142460
Start: 2096219
End: 2097139
Strand: Reverse
Name: yliC
Synonym: t2039
Alternate gene names: 29142460
Gene position: 2097139-2096219 (Counterclockwise)
Preceding gene: 29142461
Following gene: 29142459
Centisome position: 43.76
GC content: 54.72
Gene sequence:
>921_bases ATGCTTAACTATGTTCTCAAGCGCCTGCTGGGATTAATTCCTACGCTGTTGATTGTGGCAGTGCTGGTGTTTTTATTTGT TCATTTGTTGCCCGGCGACCCGGCGCGGCTGATAGCCGGACCGGAAGCCGACGCGCAGGTGATAGCGCTGGTTCGTCAGC AGCTGGGGCTTGATCAGCCGCTTCATGTCCAGTTTTGGCATTACATCACCCATGTTTTACAAGGCGATTTCGGGACGTCA ATGGTTTCCCGCCGCCCGGTTTCTGAGGAGATCGCCAGCCGCTTTTTGCCGACGCTGTGGCTGACGATAACCAGTATGAT ATGGGCGGTGTTGTTTGGCATGGCGATCGGCATCGCCGCCGCCGTGTGGCGTAATCGCTGGCCTGACCGGGTAGGAATGA CGCTTGCCGTGACCGGCATTTCTTTCCCGGCTTTTGCGCTGGGAATGTTGTTAATGCAGATTTTTTCCGTGGATCTGGGC TGGCTACCGACCGTGGGGGCGGATAGCTGGCAACATTATATTTTACCCTCCCTGACGCTTGGCGCGGCGGTGGCATCAGT CATGGCGCGTTTTACGCGCTCCTCGTTTGTCGATGTGCTGAGCGAGGATTACATGAGGACCGCGCGGGCGAAAGGCGTCA GTGAAACGTGGGTGGTGTTAAAACATGGCCTGCGCAATGCAATGATCCCGGTCGTCACCATGATGGGACTGCAATTTGGC TTTCTGCTTGGCGGATCGATCGTCGTCGAAAAAGTGTTTAACTGGCCGGGGCTTGGGCGATTACTGGTCGACTCCGTCGA CATGCGCGACTACCCCGTGATTCAGGCAGAAGTGCTGCTGTTTTCTCTGGAATTTATTCTTATCAACTTAGTGGTGGATG TCCTCTATGCCGCCATTAATCCGGCTATCAGGTATAAGTAA
Upstream 100 bases:
>100_bases GGATACCGGTTTCAGCTTTGACGATGCGGATTTGAAGTAAGTAATGCGATGGGGCTGGATGGCGCGCGCGTTGTCCGCCA TCCGGTAAAAGGTTCGTGTG
Downstream 100 bases:
>100_bases GGATGCGATTATTTAACTGGCGCCGTCAGGCGATTTTACATGCTATGCCGGTGGTAAAACCCGACCAGATACGCACGCCG TGGCGGGAGTTCTGGCGTCG
Product: ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTS MVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAAAVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLG WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK
Sequences:
>Translated_306_residues MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTS MVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAAAVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLG WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK >Mature_306_residues MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTS MVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAAAVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLG WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain
Homologues:
Organism=Escherichia coli, GI1787053, Length=306, Percent_Identity=90.1960784313726, Blast_Score=566, Evalue=1e-163, Organism=Escherichia coli, GI1789965, Length=342, Percent_Identity=43.859649122807, Blast_Score=265, Evalue=3e-72, Organism=Escherichia coli, GI1789888, Length=309, Percent_Identity=41.1003236245955, Blast_Score=221, Evalue=4e-59, Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=41.7177914110429, Blast_Score=211, Evalue=7e-56, Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=35.7142857142857, Blast_Score=191, Evalue=4e-50, Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=31.1355311355311, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=26.1707988980716, Blast_Score=118, Evalue=6e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GSIC_SALCH (Q57RB0)
Other databases:
- EMBL: AE017220 - GenomeReviews: AE017220_GR - KEGG: sec:SC0845 - HOGENOM: HBG724229 - OMA: INPTIRY - ProtClustDB: PRK15081 - BioCyc: SENT321314:SCH_0845-MONOMER - InterPro: IPR000515
Pfam domain/function: PF00528 BPD_transp_1
EC number: NA
Molecular weight: Translated: 33962; Mature: 33962
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xdf12b6c)-; HASH(0xf69d334)-; HASH(0xf0d1608)-; HASH(0xeb21de8)-; HASH(0xfbd24e4)-; HASH(0xee34c6c)-;
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHHHHCCCCC LHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAA HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLGWLPTVGADSWQHYILPSLTL HHHHCCCCCHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH GAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAIN HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC PAIRYK HHHCCH >Mature Secondary Structure MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCHHHHHHHHHHHHCCCCC LHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAA HHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVWRNRWPDRVGMTLAVTGISFPAFALGMLLMQIFSVDLGWLPTVGADSWQHYILPSLTL HHHHCCCCCHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH GAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLEFILINLVVDVLYAAIN HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC PAIRYK HHHCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA