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The map label for this gene is ybjU [H]

Identifier: 29142420

GI number: 29142420

Start: 2059309

End: 2060310

Strand: Direct

Name: ybjU [H]

Synonym: t1999

Alternate gene names: 29142420

Gene position: 2059309-2060310 (Clockwise)

Preceding gene: 29142419

Following gene: 29142421

Centisome position: 42.97

GC content: 60.08

Gene sequence:

>1002_bases
ATGATTGATTTACGCAGTGATACCGTTACCCGACCGGGCCGCGCCATGCTCGAGGCGATGATGACCGCCCCGGTCGGGGA
CGACGTATACGGCGATGCCCCTACCGTTAACGCCCTTCAGCGCTACGCCGCCGACCTTTCCGGTAAAGAAGCGGCGCTTT
TTTTACCCACCGGCACCCAGGCCAATCTGGTCGCGCTGCTTAGCCATTGTGAACGCGGCGAAGAGTATATCGTCGGTCAG
GGCGCACATAATTATCTCTATGAAGCTGGCGGCGCTGCGGTGCTCGGCAGCATTCAGCCGCAGCCTATTGATGCCGCCGC
GGACGGTACGCTGCCGCTGGAGAACGTAGCGGCGAAGATTAAAGCGGATGACATCCACTTCGCGCGCACGCGCTTGCTCA
GTCTGGAAAATACGCATAACGGGAAAGTGCTGCCGCGCGCGTATCTGAAAGACGCCTGGACGTTTACCCGCGAACGTGGG
CTGGCGCTGCACGTTGACGGCGCCCGAATTTTTAACGCGGTGGTTGCCTACGGCTGTGAGTTAAAAGAGATTACGCAGTA
TTGCGACTCTTTTACCATCTGCCTGTCAAAAGGTCTCGGGACGCCGGTCGGTTCGCTGCTGGTCGGCAACCGCGATTACA
TTAAACGCGCGACGCGCTGGCGTAAAATGGTCGGCGGCGGAATGCGTCAGGCCGGGATTCTGGCAGCGGCCGGACTGTAT
GCGCTGAAGCATAACGTGGCGCGTCTGCAAGAGGATCATGACAACGCCGCCTGGCTGGCGCAGCAGCTTCGCGAAGCGGG
CGCGGATGTCATGCGCCACGAAACGAATATGCTGTTTGTTCGCGTTGGCGAAGCACAGGCCGCCGCGCTTGGCGGCTATT
TGCGGGAACGGAATATCCTGATTAACGCCGCGCCGATTGTGCGTCTGGTGACGCATCTGGATGTCTCTCGCGAACAGCTT
GCCGACGTCGTCGCCCACTGGCGCGCCTTTTTAGCCCGCTAA

Upstream 100 bases:

>100_bases
CCATTATTAGCGGCCGCGGCGATGAAGTGATCGAACTGGCGAAAACAAACTGGCTAAGGTAAAACAGTGCACATCACCTT
TTAAAATCCAGGGATGTGCC

Downstream 100 bases:

>100_bases
GGAGAGCAACGTGGCGCAACGCATTCTGGTCCTCGGCGCCAGCGGCTATATCGGTCAGCACCTGGTCTTTGCGCTAAGTC
AGCAAGGACATCAGGTGCGG

Product: L-threonine aldolase

Products: NA

Alternate protein names: Low-specificity L-TA [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MIDLRSDTVTRPGRAMLEAMMTAPVGDDVYGDAPTVNALQRYAADLSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQ
GAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLENVAAKIKADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERG
LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRATRWRKMVGGGMRQAGILAAAGLY
ALKHNVARLQEDHDNAAWLAQQLREAGADVMRHETNMLFVRVGEAQAAALGGYLRERNILINAAPIVRLVTHLDVSREQL
ADVVAHWRAFLAR

Sequences:

>Translated_333_residues
MIDLRSDTVTRPGRAMLEAMMTAPVGDDVYGDAPTVNALQRYAADLSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQ
GAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLENVAAKIKADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERG
LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRATRWRKMVGGGMRQAGILAAAGLY
ALKHNVARLQEDHDNAAWLAQQLREAGADVMRHETNMLFVRVGEAQAAALGGYLRERNILINAAPIVRLVTHLDVSREQL
ADVVAHWRAFLAR
>Mature_333_residues
MIDLRSDTVTRPGRAMLEAMMTAPVGDDVYGDAPTVNALQRYAADLSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQ
GAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLENVAAKIKADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERG
LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRATRWRKMVGGGMRQAGILAAAGLY
ALKHNVARLQEDHDNAAWLAQQLREAGADVMRHETNMLFVRVGEAQAAALGGYLRERNILINAAPIVRLVTHLDVSREQL
ADVVAHWRAFLAR

Specific function: Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde. L-threo-phenylserine and L- erythro-phenylserine are also good substrates [H]

COG id: COG2008

COG function: function code E; Threonine aldolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the threonine aldolase family [H]

Homologues:

Organism=Escherichia coli, GI1787095, Length=333, Percent_Identity=89.1891891891892, Blast_Score=620, Evalue=1e-179,
Organism=Caenorhabditis elegans, GI193206522, Length=346, Percent_Identity=40.4624277456647, Blast_Score=241, Evalue=3e-64,
Organism=Caenorhabditis elegans, GI193206520, Length=346, Percent_Identity=40.4624277456647, Blast_Score=241, Evalue=3e-64,
Organism=Caenorhabditis elegans, GI193206524, Length=346, Percent_Identity=40.4624277456647, Blast_Score=241, Evalue=4e-64,
Organism=Saccharomyces cerevisiae, GI6320789, Length=289, Percent_Identity=39.1003460207612, Blast_Score=185, Evalue=8e-48,
Organism=Drosophila melanogaster, GI21355439, Length=305, Percent_Identity=43.9344262295082, Blast_Score=244, Evalue=9e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001597
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01212 Beta_elim_lyase [H]

EC number: =4.1.2.5 [H]

Molecular weight: Translated: 36226; Mature: 36226

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLRSDTVTRPGRAMLEAMMTAPVGDDVYGDAPTVNALQRYAADLSGKEAALFLPTGTQ
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCC
ANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLENVAAKI
HHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHH
KADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERGLALHVDGARIFNAVVAYGCE
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCC
LKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRATRWRKMVGGGMRQAGILAAAGLY
HHHHHHHHHHHHHHHHCCCCCCHHHHEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ALKHNVARLQEDHDNAAWLAQQLREAGADVMRHETNMLFVRVGEAQAAALGGYLRERNIL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCEE
INAAPIVRLVTHLDVSREQLADVVAHWRAFLAR
EEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIDLRSDTVTRPGRAMLEAMMTAPVGDDVYGDAPTVNALQRYAADLSGKEAALFLPTGTQ
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCC
ANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLENVAAKI
HHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHH
KADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERGLALHVDGARIFNAVVAYGCE
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCC
LKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRATRWRKMVGGGMRQAGILAAAGLY
HHHHHHHHHHHHHHHHCCCCCCHHHHEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ALKHNVARLQEDHDNAAWLAQQLREAGADVMRHETNMLFVRVGEAQAAALGGYLRERNIL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCEE
INAAPIVRLVTHLDVSREQLADVVAHWRAFLAR
EEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]