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The map label for this gene is ybjD [H]

Identifier: 29142415

GI number: 29142415

Start: 2051860

End: 2053518

Strand: Reverse

Name: ybjD [H]

Synonym: t1994

Alternate gene names: 29142415

Gene position: 2053518-2051860 (Counterclockwise)

Preceding gene: 29142423

Following gene: 29142413

Centisome position: 42.85

GC content: 55.7

Gene sequence:

>1659_bases
ATGATTCTCGAACGCGTTGAAATAGTAGGATTTCGCGGTATCAACCGACTATCGTTGATGCTGGAGCAAAACAACGTGCT
GATTGGGGAAAACGCCTGGGGCAAATCCAGCCTGCTGGATGCGCTGACTCTGTTATTGTCGCCGGAACTCGATCTCTACC
ATTTTGTCCGTGAGGATTTCTGGTTTCCGCCTGGCGACATAAAAGGACGCGAGCATCACCTGCATATTATTCTGACTTTT
CGCGAAACGCAGCCAGGGCGGCATCGGGTACGTCGTTATCGGGCGCTGGAAGCATGCTGGTCGCCTTGCGAGGATGATTT
TCACCGTATTTTTTATCGTCTAGAGGGCGAATGTGGCGCCGATGGCAGCGTGATGACGCTGCGCAGTTTTCTCAATAGCG
ATGGGCAGCCATTGCCGGTGGAAAATATTAACGATCAGGTGCGCCACCTGGTTCGTCTGATGCCAGTGCTACGTTTGCGC
GATGCGCGCTTTATGCGACGTATTCGCAACGGCACGGTGCCCAATGTGCCGGATGTTGAAGTCACGGCCCGGCAACTGGA
TTTTCTGGCGCGTGAGCTGGCGACCCGGCCGCAAAATTTAACCGACGGGCAGATTCGTCAGGGACTGTCCGCGATGGTGC
AACTGCTTGAACACTATTTCTCAGAGCAGGGCGCAGGACAGGCGCGTCACCGACTCATGCGCCGGCGTTCGCAAAATGAG
CAGCGTAGCTGGCGCTATCTGGATATTATTAATCGGATGATCGACAAACCGGGCAGCCGGTCGCATCGGGTGATCCTGCT
GGGGCTTTTCTCCACGCTGTTACAGGCGAAAGGGACGCTGCGGTTACATAAAGACGCGCGACCATTACTGCTGGTGGAAG
ATCCGGAAACCCGTTTACATCCCATTATGCTTTCAGTCGCCTGGCAATTGCTCAATCTGTTACCGCTACAGCGGATAGCG
ACAACCAACTCAGGCGAACTGCTCTCGCTAACGCCGGTGGAGCATGTCGTACGGCTGGTGCGCGAATCTTCCCGCGTCGC
CGCCTGGCGTCTGGGCACGGGCGGGTTAAGCGCGGAAGATGGACGGCGCATCGCCTTTCATATCCGCTTTAATCGCGCGT
CGTCGCTGTTTGCGCGTTGCTGGCTACTGGTGGAAGGCGAGACGGAAACCTGGGTTATTAATGAGCTGGCGCGTCAGTGT
GGACATCATTTTGATGCGGAGGGAATTAAAGTCATTGAATTTGCTCAGTCTGGCCTGAAACCGCTGGTGAAGTTCGCCCG
CCGTATGGGAATCGAGTGGCATGTCCTGGTGGATGGCGACGAAGCGGGGAAAAAATATGCCGCGACGGTCCGCAGCCTGC
TTAATAACGATCGGGAAGAAGAACGCGAACATCTCACGGCGCTGCCTACGCTGGATATGGAACATTTTATGTATCGTCAG
GGCTTTGCCGATGTTTTTCACCGGGTTGCGCAACTTCCGCTTAATGTGCCGATGAATACCCGGAAAATTATCACTAAAGC
TATCCACCGCTCGTCAAAGCCGGATTTGGCGATTGAAGTCGCGATGGAAGCCGGGCGGCGCGGAATTGACGCCGTGCCGC
CGCTGTTCAGAAAGATGTTCTCGCGCGTGGTTTGGCTGGCGCGGGGCCGGGCGGATTAG

Upstream 100 bases:

>100_bases
AGTTGCCCCAGGCAAAGGGGGGAATATCACGCCAGGCGGAAGCATTTGCCGTTATACTGCGGTGAGTTTAATGGAGTGGT
GACGTTTTTCTGGAGGAAGC

Downstream 100 bases:

>100_bases
CGTTTGAATGTGGCCGGAACCTGTTCGACGACGCTATCGAGTAATGCATAGCGGCGGCGATACTCGGCCCGTTTTTTACT
GGCGATCTCCGCTTCGCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTF
RETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLR
DARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNE
QRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIA
TTNSGELLSLTPVEHVVRLVRESSRVAAWRLGTGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPTLDMEHFMYRQ
GFADVFHRVAQLPLNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD

Sequences:

>Translated_552_residues
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTF
RETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLR
DARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNE
QRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIA
TTNSGELLSLTPVEHVVRLVRESSRVAAWRLGTGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPTLDMEHFMYRQ
GFADVFHRVAQLPLNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD
>Mature_552_residues
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTF
RETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLR
DARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNE
QRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIA
TTNSGELLSLTPVEHVVRLVRESSRVAAWRLGTGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPTLDMEHFMYRQ
GFADVFHRVAQLPLNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=552, Percent_Identity=89.6739130434783, Blast_Score=996, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 63565; Mature: 63565

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDF
CCCCCEEECCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
WFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGA
CCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
DGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLRDARFMRRIRNGTVPNVPDVE
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
VTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
QRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLH
HHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHH
PIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGTGGLSAED
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCC
GRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK
CCEEEEEEEECCHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPTLDMEHFMYRQ
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH
GFADVFHRVAQLPLNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMF
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHHCCCCCCCCCHHHHHHH
SRVVWLARGRAD
HHHHHHHCCCCC
>Mature Secondary Structure
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDF
CCCCCEEECCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
WFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGA
CCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
DGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLRDARFMRRIRNGTVPNVPDVE
CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
VTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
QRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLH
HHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHH
PIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGTGGLSAED
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCC
GRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK
CCEEEEEEEECCHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPTLDMEHFMYRQ
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHH
GFADVFHRVAQLPLNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMF
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHHCCCCCCCCCHHHHHHH
SRVVWLARGRAD
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]