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The map label for this gene is ycaL [H]

Identifier: 29142378

GI number: 29142378

Start: 2005745

End: 2006506

Strand: Reverse

Name: ycaL [H]

Synonym: t1955

Alternate gene names: 29142378

Gene position: 2006506-2005745 (Counterclockwise)

Preceding gene: 29142379

Following gene: 29142377

Centisome position: 41.87

GC content: 50.79

Gene sequence:

>762_bases
ATGAAAAATAAATCATTACTACTGGCGGTGGCGATTTCCGCCACGCTACTGGCAGGATGTAAAAATGGCGTGAATGGCAA
TTTAATCGCCAGTTCCGGCATGTCAGCCTACAAAGCCGCCACACTGTCCGATGCGGATGTTAAAGCATTATCTAATAATG
CCTGTAAACAAATGGACAGCGAGAATCAACTGGCAGGTTCGAAAAGCAAATACACCAAACGTCTGAGTAAAATCGCTAAA
GCGCTGGGTAACAACATTGACGGTACGCCGGTTAGCTATAAAGTCTATATGACCAGCGATATCAACGCATGGGCGATGGC
GAACGGTTGCGTTCGCGTATACTCCGGCCTGATGGATCTGATGACCGATAATGAAATTGAAGGCGTACTGGGCCATGAAC
TGGGCCATGTCTCTTTAGGGCACTCCCGCAAGGCAATGCAGACCGCCTATGCCACGCTGGCGGCTCGCGATGCGATTTCC
GCCACCAGCGGCGTCGCAGCGCAGCTTTCCCAGTCTCAATTGGGCGATCTGGCGGAAGGCGTCATCAATTTGGCGTTTTC
TCGCAGTCAGGAGTCGGATGCGGATGACTTCTCTTACAATCTGCTGAAAAAACGTGGGATTAACACCCAGGGCTTAGTCA
CGGCATTCGATAAATTCGCCATAATGGACGCAGGTCATGCAAAATCATTGATGGACTCCCACCCGGCCTCAGCCGATCGC
GCGCAGCATATGCGCGACAGAATTGCCGAAGATAAAAAGTAA

Upstream 100 bases:

>100_bases
TATTCGCACTATTTTTATAATTATGACTAATGCTAATTTGTTGGTGATTTAACACATTGATTTATGTGTTTTTTATAATA
GTTATCAACGGAAGATTAGT

Downstream 100 bases:

>100_bases
ATCATTGTCATCTTTCGGGCTGGTTTCTCGCCAGCCCGCTATAATTGCGCAATTATTCCGCATCTGATTACAGACAAAAC
TGGTTTTTGCACGCAACGTT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKNKSLLLAVAISATLLAGCKNGVNGNLIASSGMSAYKAATLSDADVKALSNNACKQMDSENQLAGSKSKYTKRLSKIAK
ALGNNIDGTPVSYKVYMTSDINAWAMANGCVRVYSGLMDLMTDNEIEGVLGHELGHVSLGHSRKAMQTAYATLAARDAIS
ATSGVAAQLSQSQLGDLAEGVINLAFSRSQESDADDFSYNLLKKRGINTQGLVTAFDKFAIMDAGHAKSLMDSHPASADR
AQHMRDRIAEDKK

Sequences:

>Translated_253_residues
MKNKSLLLAVAISATLLAGCKNGVNGNLIASSGMSAYKAATLSDADVKALSNNACKQMDSENQLAGSKSKYTKRLSKIAK
ALGNNIDGTPVSYKVYMTSDINAWAMANGCVRVYSGLMDLMTDNEIEGVLGHELGHVSLGHSRKAMQTAYATLAARDAIS
ATSGVAAQLSQSQLGDLAEGVINLAFSRSQESDADDFSYNLLKKRGINTQGLVTAFDKFAIMDAGHAKSLMDSHPASADR
AQHMRDRIAEDKK
>Mature_253_residues
MKNKSLLLAVAISATLLAGCKNGVNGNLIASSGMSAYKAATLSDADVKALSNNACKQMDSENQLAGSKSKYTKRLSKIAK
ALGNNIDGTPVSYKVYMTSDINAWAMANGCVRVYSGLMDLMTDNEIEGVLGHELGHVSLGHSRKAMQTAYATLAARDAIS
ATSGVAAQLSQSQLGDLAEGVINLAFSRSQESDADDFSYNLLKKRGINTQGLVTAFDKFAIMDAGHAKSLMDSHPASADR
AQHMRDRIAEDKK

Specific function: Unknown

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M48B family [H]

Homologues:

Organism=Escherichia coli, GI87081800, Length=254, Percent_Identity=69.6850393700787, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI87082185, Length=251, Percent_Identity=55.7768924302789, Blast_Score=300, Evalue=6e-83,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 26827; Mature: 26827

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKSLLLAVAISATLLAGCKNGVNGNLIASSGMSAYKAATLSDADVKALSNNACKQMDS
CCCCCEEHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHCCCCHHHHHHHHHHHHHCCC
ENQLAGSKSKYTKRLSKIAKALGNNIDGTPVSYKVYMTSDINAWAMANGCVRVYSGLMDL
CHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
MTDNEIEGVLGHELGHVSLGHSRKAMQTAYATLAARDAISATSGVAAQLSQSQLGDLAEG
HCCCCHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VINLAFSRSQESDADDFSYNLLKKRGINTQGLVTAFDKFAIMDAGHAKSLMDSHPASADR
HHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHH
AQHMRDRIAEDKK
HHHHHHHHHCCCC
>Mature Secondary Structure
MKNKSLLLAVAISATLLAGCKNGVNGNLIASSGMSAYKAATLSDADVKALSNNACKQMDS
CCCCCEEHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHCCCCHHHHHHHHHHHHHCCC
ENQLAGSKSKYTKRLSKIAKALGNNIDGTPVSYKVYMTSDINAWAMANGCVRVYSGLMDL
CHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
MTDNEIEGVLGHELGHVSLGHSRKAMQTAYATLAARDAISATSGVAAQLSQSQLGDLAEG
HCCCCHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VINLAFSRSQESDADDFSYNLLKKRGINTQGLVTAFDKFAIMDAGHAKSLMDSHPASADR
HHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHH
AQHMRDRIAEDKK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7836281 [H]