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The map label for this gene is ssaQ [H]

Identifier: 29141747

GI number: 29141747

Start: 1352114

End: 1353082

Strand: Direct

Name: ssaQ [H]

Synonym: t1286

Alternate gene names: 29141747

Gene position: 1352114-1353082 (Clockwise)

Preceding gene: 29141746

Following gene: 29141748

Centisome position: 28.22

GC content: 45.61

Gene sequence:

>969_bases
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGGTGGAGATACTTCCAACACAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACATTATTTACCATAAATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAACAATGCTGGCAGCGCTGGTGTGAAGGGCTAATTGGCACCGCTAATCGATCGGCTATTGAGCCTGAATTGCTATAT
GGAATAGCTGAATGGGGGCTGGCGCCGTTATTGCAAGCCAGTGATGCAACCCTCTGTCAGAACGAGCCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAACATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTTTGCGCAATATAGTCGGAGAGCTTTCTGCTGAGCGTCAACAGATTTATCCTGCTCCTCCTGTGGTA
GTCCCTGTATATTTAGGCTGGTGTCAGCTTACATTAATTGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTTGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGTATTTACGCGAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGACGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGCCCGATGTTAAAGAGTGAT
GGAACGTCTTCAGTCGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGATTGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAACTTAAAACGGGGGACGTTTTGCCTGTAGGCGGATGTTTTGCGCCAGAAGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGGAATGAATTCATGGTACGTATTACACGTTGGTATCTTTGCAAAAAT
ACAGCGTAA

Upstream 100 bases:

>100_bases
GTCCCTCATCATGAAATTTACCGTTCGATGAAAGCGCTAAAGCAGTGGCTGGAGTCTCAGTTGCTGCATATGGGGTATAT
AATTTCCCTGGAGATATTCT

Downstream 100 bases:

>100_bases
ACCTGATAAGAAAAATAATATGCGAACAATATAATAGCGTTCCAGGTCGTGTCATGAGAGATACAGTATGTCTTTACCCG
ATTCGCCTTTGCAACTGATT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIEPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

Sequences:

>Translated_322_residues
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIEPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA
>Mature_322_residues
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIEPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

Specific function: Part of a type III secretion system [H]

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001172
- InterPro:   IPR001543
- InterPro:   IPR013385 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 36090; Mature: 36090

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQR
CCCCCCCCCCEEEEECCCCCCHHHEEEEHHHCCCCCCEEEEEEECCCCCCEEHHHHHHHH
WCEGLIGTANRSAIEPELLYGIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKW
HHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCHHCCCCEEEEEEEE
TVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVVVPVYLGWCQLTLIELESIEI
EEECCCEEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCEEEEEEEEEEEEEE
GMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLKSD
CCCEEEEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGE
CCCCEEHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECCCCCCEEEEEECCEEECCCC
LIACGNEFMVRITRWYLCKNTA
EEEECCHHHHEEEEEEEECCCC
>Mature Secondary Structure
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQR
CCCCCCCCCCEEEEECCCCCCHHHEEEEHHHCCCCCCEEEEEEECCCCCCEEHHHHHHHH
WCEGLIGTANRSAIEPELLYGIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKW
HHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCHHCCCCEEEEEEEE
TVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVVVPVYLGWCQLTLIELESIEI
EEECCCEEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCEEEEEEEEEEEEEE
GMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLKSD
CCCEEEEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGE
CCCCEEHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECCCCCCEEEEEECCEEECCCC
LIACGNEFMVRITRWYLCKNTA
EEEECCHHHHEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 9140973; 9023191 [H]