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The map label for this gene is ydiU [H]

Identifier: 29141690

GI number: 29141690

Start: 1292016

End: 1293458

Strand: Direct

Name: ydiU [H]

Synonym: t1226

Alternate gene names: 29141690

Gene position: 1292016-1293458 (Clockwise)

Preceding gene: 29141689

Following gene: 29141694

Centisome position: 26.96

GC content: 54.19

Gene sequence:

>1443_bases
ATGACCCTGTCTTTTACTGCCCGTTGGCGCGATGAATTGCCAGCAACGTATACCGCGCTTTTACCCACACCGTTAAAAAA
TGCGCGACTGATTTGGTATAACGACGAACTGGCGCAGCAGTTAGCCATTCCCGCTTCGTTATTTGACGCTACCAATGGCG
CTGGCGTTTGGGGCGGCGAAACCTTATTACCCGGTATGTCGCCTGTCGCGCAGGTATATAGCGGGCATCAGTTCGGCATC
TGGGCGGGACAACTCGGCGACGGACGCGGTATTTTGCTGGGCGAACAGCTCCTGGCGGATGGCTCGACCCTCGACTGGCA
TCTGAAAGGCGCCGGATTAACACCCTATTCGCGAATGGGAGATGGACGCGCCGTCCTGCGTTCAACCATACGAGAAAGTC
TTGCCAGCGAAGCTATGCATTATCTGGGTATTCCCACTACGCGCGCGTTATCTATCGTAGCCAGCGATACGCCGGTTCAG
CGAGAGACGCAGGAAACGGGCGCGATGTTAATGCGTCTGGCACAAAGTCATATGCGTTTTGGTCATTTCGAACATTTCTA
TTACCGCCGTGAGCCGGAAAAAGTTCAGCAACTGGCTGATTTCGCTATTCGCCATTACTGGCCGCAATGGCAGGATGTAG
CGGAAAAATATGCTTTGTGGTTTGAAGAGGTGGCGGCGCGTACCGGAAGACTCATCGCCGAGTGGCAAACCGTCGGTTTT
TCGCACGGCGTTATGAATACGGATAACATGTCGATTCTGGGGCTGACCATCGACTATGGCCCCTTTGGTTTTCTCGACGA
CTACGATCCCGGCTTCATTGGTAACCATTCCGATCATCAGGGACGTTACCGCTTCGATAATCAACCGTCGGTGGCGCTGT
GGAATTTACAACGTCTGGCGCAGACGTTAACCCCTTTTATTGAGATCGACGCGTTAAACAGAGCGCTGGATCGTTACCAG
GACGCGTTGTTAACGCACTATGGGCAGCGAATGCGCCAGAAGCTGGGCTTCTTTACCGAGCAAAAAGACGATAACGCTTT
ACTGAATGAATTGTTTAGTCTGATGGCGCGCGAAGGGAGTGATTATACCCGTACATTTCGGATGTTAAGCCATACGGAGC
AACAGAGCGCCTCCTCGCCGTTGCGGGATACGTTTATCGATCGCGCGGCGTTCGATGCCTGGTTCGACCGCTACCGGGCG
CGATTGCGCACAGAGGCGGTGGATGACGCGCTGCGCCAACAGCAGATGCAACGCGTGAATCCTGCGATTGTGTTGCGCAA
CTGGCTGGCGCAACGCGCGATAGATGCGGCTGAACAAGGAGACATGGCGGAACTGCATCGGTTGCATGAAGTTTTACGTC
AACCTTTTACCGATCGAGATGATGACTATGCCAGCCGACCGCCGGAGTGGGGAAAGCGGCTGGAGGTCAGTTGTTCAAGT
TAG

Upstream 100 bases:

>100_bases
GTGCCGGTAAGCCAGCTCATTAAACTCGTTCAGCGATAACCTTTCTGTTTGCCGGTGTTTAACCGGTGATTAACCGTCTA
CACTGAAGACAGGAGGCCCT

Downstream 100 bases:

>100_bases
CCAGATGCCAGCAGAATCGTCTGCTGGCGGGAGCGCTATTTGGTTAACAGTAGCTTACCGGCCTGAGTTTTGCGCAACAG
ATACTCCTGACCGTTGTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGI
WAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQ
RETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVAEKYALWFEEVAARTGRLIAEWQTVGF
SHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQ
DALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRA
RLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYASRPPEWGKRLEVSCSS

Sequences:

>Translated_480_residues
MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGI
WAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQ
RETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVAEKYALWFEEVAARTGRLIAEWQTVGF
SHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQ
DALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRA
RLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYASRPPEWGKRLEVSCSS
>Mature_479_residues
TLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGIW
AGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQR
ETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVAEKYALWFEEVAARTGRLIAEWQTVGFS
HGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQD
ALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRAR
LRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYASRPPEWGKRLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=383, Percent_Identity=44.1253263707572, Blast_Score=301, Evalue=1e-81,
Organism=Escherichia coli, GI1787999, Length=480, Percent_Identity=81.875, Blast_Score=824, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6325034, Length=360, Percent_Identity=35.5555555555556, Blast_Score=215, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54818; Mature: 54687

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGE
CCEEECCHHHHCCCCCEEHHCCCCCCCCEEEEECHHHHHHHHCCHHHHHCCCCCCCCCCC
TLLPGMSPVAQVYSGHQFGIWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMG
CCCCCCHHHHHHHCCCEEEEEECCCCCCCEEEEHHHHHCCCCCEEEEEECCCCCCHHHCC
DGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQRETQETGAMLMRLAQSHMRF
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVAEKYALWFEEVAARTGRLIAEWQTVGF
CCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC
SHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLA
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
QTLTPFIEIDALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGS
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
DYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRARLRTEAVDDALRQQQMQRVN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYASRPPEWGKRLEVSCSS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure 
TLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGE
CEEECCHHHHCCCCCEEHHCCCCCCCCEEEEECHHHHHHHHCCHHHHHCCCCCCCCCCC
TLLPGMSPVAQVYSGHQFGIWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMG
CCCCCCHHHHHHHCCCEEEEEECCCCCCCEEEEHHHHHCCCCCEEEEEECCCCCCHHHCC
DGRAVLRSTIRESLASEAMHYLGIPTTRALSIVASDTPVQRETQETGAMLMRLAQSHMRF
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVAEKYALWFEEVAARTGRLIAEWQTVGF
CCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC
SHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLA
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
QTLTPFIEIDALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNALLNELFSLMAREGS
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
DYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRARLRTEAVDDALRQQQMQRVN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYASRPPEWGKRLEVSCSS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA