Click here to switch to the map view.

The map label for this gene is potA [H]

Identifier: 29141607

GI number: 29141607

Start: 1210485

End: 1211075

Strand: Direct

Name: potA [H]

Synonym: t1137

Alternate gene names: 29141607

Gene position: 1210485-1211075 (Clockwise)

Preceding gene: 29141606

Following gene: 29141609

Centisome position: 25.26

GC content: 57.36

Gene sequence:

>591_bases
ATGCTGAGCTGCCGCGACCTCGTTATTCGTCAGGGCGGGAAAGTCTTATGGCAGAACCTGACGTTTACGATTTCTGCCGG
TGAACGGGTAGGAATTCATGCGCCAAGCGGAACGGGGAAAACAACGTTGGGGCGCGTCCTGGCCGGATGGCAAAAGCCGA
CGACGGGCGACGTTCTGCTGGACGGCAGCCCGTTACCCCTGCATCAGTATTGCCCGGTACAGCTGGTCCCCCAGCATCCT
GAACTGACGTTTAATCCCTGGCGAAGCGCCGGAGACGCTGTGCGTGATGCCTGGCAGCCTGACCCGGAAACGTTGAGACG
TTTGTATGTGCAGCCCGAGTGGCTGACGCGTCGGCCAATGCAGCTCTCAGGCGGGGAGTTGGCGCGTATTGCGATACTAC
GCGCGCTTGACCCGCGAGCGCGTTTTCTGATTGCCGACGAAATGACGGCGCAACTCGATCCGTCTATTCAAAAAGCGATA
TGGGTATACGTGCTTGAGGTGTGCCGCAGCCGTTCATTAGGGATGTTGGTGATTAATCATCAGTCTGCGCTACTTGATCA
AGTCTGTACCCGCCATTTACAGGTGGAATAG

Upstream 100 bases:

>100_bases
AACGATTACAGCCGGAAGAGATGAGTGAGCCGTTAAAACGGCAATGGCAGGCATTGCCTGAACTAAACCCGTTATTTATG
CCGACCGGAGAGGGAATAGA

Downstream 100 bases:

>100_bases
CCGCAAGTCGTTTCTCCGCATTGTCGTGTCGCCGTTAACGCACCGGGAGCCCATGGGTTCCCGGTATTGTCGGCAGAGAT
TTTACTGCATGACGCGTTTA

Product: ABC transport ATP-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTTGDVLLDGSPLPLHQYCPVQLVPQHP
ELTFNPWRSAGDAVRDAWQPDPETLRRLYVQPEWLTRRPMQLSGGELARIAILRALDPRARFLIADEMTAQLDPSIQKAI
WVYVLEVCRSRSLGMLVINHQSALLDQVCTRHLQVE

Sequences:

>Translated_196_residues
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTTGDVLLDGSPLPLHQYCPVQLVPQHP
ELTFNPWRSAGDAVRDAWQPDPETLRRLYVQPEWLTRRPMQLSGGELARIAILRALDPRARFLIADEMTAQLDPSIQKAI
WVYVLEVCRSRSLGMLVINHQSALLDQVCTRHLQVE
>Mature_196_residues
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTTGDVLLDGSPLPLHQYCPVQLVPQHP
ELTFNPWRSAGDAVRDAWQPDPETLRRLYVQPEWLTRRPMQLSGGELARIAILRALDPRARFLIADEMTAQLDPSIQKAI
WVYVLEVCRSRSLGMLVINHQSALLDQVCTRHLQVE

Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]

COG id: COG1124

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=188, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI6005701, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1787547, Length=193, Percent_Identity=26.9430051813472, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1788506, Length=196, Percent_Identity=29.0816326530612, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=26.0663507109005, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789891, Length=197, Percent_Identity=26.9035532994924, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI1786698, Length=197, Percent_Identity=29.4416243654822, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI145693107, Length=193, Percent_Identity=28.4974093264249, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787758, Length=186, Percent_Identity=31.1827956989247, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI87081791, Length=193, Percent_Identity=27.979274611399, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787500, Length=214, Percent_Identity=26.1682242990654, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=27.2251308900524, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1789962, Length=189, Percent_Identity=24.3386243386243, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786345, Length=211, Percent_Identity=29.3838862559242, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787112, Length=180, Percent_Identity=30, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787164, Length=187, Percent_Identity=28.3422459893048, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=191, Percent_Identity=30.8900523560209, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=192, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21357907, Length=184, Percent_Identity=29.3478260869565, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR017879
- InterPro:   IPR005893
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: =3.6.3.31 [H]

Molecular weight: Translated: 21976; Mature: 21976

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTTGDVLL
CCCHHHHHHHCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DGSPLPLHQYCPVQLVPQHPELTFNPWRSAGDAVRDAWQPDPETLRRLYVQPEWLTRRPM
CCCCCCCCCCCCEEEECCCCCCEECCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHCCCC
QLSGGELARIAILRALDPRARFLIADEMTAQLDPSIQKAIWVYVLEVCRSRSLGMLVINH
CCCCCCHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECC
QSALLDQVCTRHLQVE
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTTGDVLL
CCCHHHHHHHCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DGSPLPLHQYCPVQLVPQHPELTFNPWRSAGDAVRDAWQPDPETLRRLYVQPEWLTRRPM
CCCCCCCCCCCCEEEECCCCCCEECCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHCCCC
QLSGGELARIAILRALDPRARFLIADEMTAQLDPSIQKAIWVYVLEVCRSRSLGMLVINH
CCCCCCHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECC
QSALLDQVCTRHLQVE
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA