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The map label for this gene is sdaA [H]

Identifier: 29141526

GI number: 29141526

Start: 1134788

End: 1136152

Strand: Reverse

Name: sdaA [H]

Synonym: t1051

Alternate gene names: 29141526

Gene position: 1136152-1134788 (Counterclockwise)

Preceding gene: 29141527

Following gene: 29141525

Centisome position: 23.71

GC content: 55.6

Gene sequence:

>1365_bases
GTGATTAGCCTATTCGACATGTTTAAGGTAGGGATTGGTCCCTCCTCTTCCCACACTGTTGGCCCGATGAAGGCCGGTAA
ACAGTTCGTCGATGACCTAGTCGAAAAAGGATTACTGGATAACGTTACCCGCGTCGCTGTCGATGTCTACGGCTCGCTGT
CGCTGACGGGGAAAGGTCACCATACCGATATCGCCATTATTATGGGTCTGGCGGGTAATGAACCCGCTACCGTGGATATT
GATAGTATCCCCGGTTTTATTCGCGACGTCGAAACGCGCGAGCGTCTGTTACTGGCCCAGGGACGTCACGAAGTCGACTT
CCCGAAAGATGACGGAATGCGTTTTCACAACGGCAATTTGCCGCTGCATGAAAACGGGATGCAGATCCACGCCTGGCATG
ACGACACGGTCATTTATAGCAAGACGTACTATTCCATCGGCGGCGGCTTTATCGTTGATGAAGCGCATTTCGGCCAGGAA
GCGACGAATGAGGTTACTGTACCTTATCCGTTTAAATCGGCGAAAGAAATGCTGGAGTATTGCAACAGCACCGGCCTTTC
ACTCTCCGGCATGGTGATGCAAAACGAACTGGCGCTGCATAGCAAGAAAGAGATTGAAGAGTATTTCGGTCACGTCTGGC
AAACCATGCAGGCTTGTATTGATCGCGGTATGAATACCGAAGGCGTTCTGCCGGGGCCGCTGCGCGTACCGCGTCGCGCC
TCTGCGCTGCGTCGTATGCTGGTTTCCAGCGATAAGCTTTCCAGCGATCCGATGAACGTCATTGACTGGGTGAACATGTT
TGCTCTGGCGGTGAACGAAGAGAACGCCGCAGGCGGTCGCGTCGTGACGGCGCCAACCAACGGCGCGTGCGGCATCGTTC
CTGCGGTACTGGCTTACTACGACCATTTTATTGAGTCTGTCAGCCCGGATATTTACACCCGCTACTTCCTGGCGGCAGGC
GCTATTGGCGCGCTGTATAAGATGAACGCGTCTATTTCCGGCGCGGAAGTCGGCTGTCAGGGCGAAGTCGGGGTCGCCTG
TTCGATGGCGGCGGCAGGCCTTGCTGAACTGTTGGGCGCCAGCCCGGAACAGGTTTGCGTTGCCGCTGAAATCGGCATGG
AGCATAACCTGGGGCTGACCTGCGACCCGGTTGCCGGTCAGGTGCAGGTGCCGTGTATCGAGCGTAACGCCATTGCTTCG
GTTAAAGCGATCAACGCTGCGCGTATGGCCATGCGTCGAACCAGCGCGCCGCGCGTCTCGCTGGATAAAGTCATCGAAAC
GATGTACGAGACCGGAAAAGACATGAACGCCAAATACCGCGAAACGTCGCGCGGCGGGTTGGCTATTAAAGTCCAGTGTG
ATTAA

Upstream 100 bases:

>100_bases
TCATGTGAATAGTTAAGCTGATGCCAGCGTTCCCTCTTACACTATGCGCAGTTATAACATCGTAACCGGAAGCCCCGGTT
GCCCTGTCAGGAGTATTATC

Downstream 100 bases:

>100_bases
ACGCCATTTCCCCTCCCTTCGCCCATCTGCTACGGATGGGCGAAATTTTTATCTCTTCCTCGTCGACTCCACGTTTCCCC
ACTACACTTGCTGTGTCGCG

Product: L-serine deaminase 1

Products: NA

Alternate protein names: SDH 1; L-serine deaminase 1; L-SD1 [H]

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDNVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDI
DSIPGFIRDVETRERLLLAQGRHEVDFPKDDGMRFHNGNLPLHENGMQIHAWHDDTVIYSKTYYSIGGGFIVDEAHFGQE
ATNEVTVPYPFKSAKEMLEYCNSTGLSLSGMVMQNELALHSKKEIEEYFGHVWQTMQACIDRGMNTEGVLPGPLRVPRRA
SALRRMLVSSDKLSSDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFLAAG
AIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIAS
VKAINAARMAMRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD

Sequences:

>Translated_454_residues
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDNVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDI
DSIPGFIRDVETRERLLLAQGRHEVDFPKDDGMRFHNGNLPLHENGMQIHAWHDDTVIYSKTYYSIGGGFIVDEAHFGQE
ATNEVTVPYPFKSAKEMLEYCNSTGLSLSGMVMQNELALHSKKEIEEYFGHVWQTMQACIDRGMNTEGVLPGPLRVPRRA
SALRRMLVSSDKLSSDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFLAAG
AIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIAS
VKAINAARMAMRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
>Mature_454_residues
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDNVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDI
DSIPGFIRDVETRERLLLAQGRHEVDFPKDDGMRFHNGNLPLHENGMQIHAWHDDTVIYSKTYYSIGGGFIVDEAHFGQE
ATNEVTVPYPFKSAKEMLEYCNSTGLSLSGMVMQNELALHSKKEIEEYFGHVWQTMQACIDRGMNTEGVLPGPLRVPRRA
SALRRMLVSSDKLSSDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFLAAG
AIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIAS
VKAINAARMAMRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD

Specific function: Deaminates also threonine, particularly when it is present in high concentration [H]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-sulfur dependent L-serine dehydratase family [H]

Homologues:

Organism=Escherichia coli, GI1788116, Length=454, Percent_Identity=94.273127753304, Blast_Score=896, Evalue=0.0,
Organism=Escherichia coli, GI1789161, Length=455, Percent_Identity=76.7032967032967, Blast_Score=734, Evalue=0.0,
Organism=Escherichia coli, GI48994925, Length=453, Percent_Identity=72.6269315673289, Blast_Score=671, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004644
- InterPro:   IPR005130
- InterPro:   IPR005131 [H]

Pfam domain/function: PF03313 SDH_alpha; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 49014; Mature: 49014

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDNVTRVAVDVYGSLSLTGKGH
CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC
HTDIAIIMGLAGNEPATVDIDSIPGFIRDVETRERLLLAQGRHEVDFPKDDGMRFHNGNL
CCEEEEEEEECCCCCCEEEHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
PLHENGMQIHAWHDDTVIYSKTYYSIGGGFIVDEAHFGQEATNEVTVPYPFKSAKEMLEY
CEECCCCEEEEECCCEEEEEEEEEECCCCEEEECHHCCCCCCCCEECCCCCHHHHHHHHH
CNSTGLSLSGMVMQNELALHSKKEIEEYFGHVWQTMQACIDRGMNTEGVLPGPLRVPRRA
HCCCCCEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
SALRRMLVSSDKLSSDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYY
HHHHHHHHHCCCCCCCCHHHHHHHHHHEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHH
DHFIESVSPDIYTRYFLAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGA
HHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
SPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMAMRRTSAPRVS
CHHHEEEEEECCCCCCCCEEECCCCCCEECCEECCCHHHHHHHHHHHHHHHHHCCCCCCC
LDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
HHHHHHHHHHCCCCCCCHHHCCCCCCEEEEEEEC
>Mature Secondary Structure
MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDNVTRVAVDVYGSLSLTGKGH
CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC
HTDIAIIMGLAGNEPATVDIDSIPGFIRDVETRERLLLAQGRHEVDFPKDDGMRFHNGNL
CCEEEEEEEECCCCCCEEEHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCC
PLHENGMQIHAWHDDTVIYSKTYYSIGGGFIVDEAHFGQEATNEVTVPYPFKSAKEMLEY
CEECCCCEEEEECCCEEEEEEEEEECCCCEEEECHHCCCCCCCCEECCCCCHHHHHHHHH
CNSTGLSLSGMVMQNELALHSKKEIEEYFGHVWQTMQACIDRGMNTEGVLPGPLRVPRRA
HCCCCCEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
SALRRMLVSSDKLSSDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYY
HHHHHHHHHCCCCCCCCHHHHHHHHHHEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHH
DHFIESVSPDIYTRYFLAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGA
HHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
SPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMAMRRTSAPRVS
CHHHEEEEEECCCCCCCCEEECCCCCCEECCEECCCHHHHHHHHHHHHHHHHHCCCCCCC
LDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
HHHHHHHHHHCCCCCCCHHHCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2504697; 8436113; 9097040; 9278503 [H]