Click here to switch to the map view.

The map label for this gene is fliN [H]

Identifier: 29141387

GI number: 29141387

Start: 997921

End: 998334

Strand: Reverse

Name: fliN [H]

Synonym: t0900

Alternate gene names: 29141387

Gene position: 998334-997921 (Counterclockwise)

Preceding gene: 29141388

Following gene: 29141386

Centisome position: 20.83

GC content: 54.59

Gene sequence:

>414_bases
ATGAGTGACATGAATAATCCGTCCGATGAGAATACTGGCGCATTGGATGATCTGTGGGCTGACGCGTTAAACGAGAAAAA
AGCGACCACCAATAAAAGCGCCGCCGACGCGGTTTTCCAACAGCTTGGCGGCGGCGATGTCAGCGGTGCTATGCAGGATA
TCGATCTGATTATGGATATCCCGGTCAAACTGACCGTAGAGCTGGGCCGCACGCGAATGACCATTAAAGAACTGCTGCGT
CTGACGCAGGGGTCGGTCGTCGCGCTGGACGGGCTGGCGGGCGAGCCGCTGGACATCCTGATTAATGGCTACCTGATTGC
CCAGGGTGAAGTGGTCGTCGTGGCGGATAAATACGGCGTACGTATCACCGATATTATTACGCCATCCGAGCGTATGCGTC
GTTTGAGTCGTTAA

Upstream 100 bases:

>100_bases
TACTCACCAGCCAATATGGCACCGTAAACGGACAGTATGCGCTACGCGTAGAACATTTGATCAACCCAATTTTGAATTCG
CTGAATGAGGAACAGCCCAA

Downstream 100 bases:

>100_bases
TGATGAAGACAGAGGCCACGGTTTCTCAGCCCACCGCGCCAGCCGGATCGCCGCTCATGCAGGTGAGCGGCGCATTAATT
GGCATTATTGCGCTCATTCT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSDMNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLR
LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Sequences:

>Translated_137_residues
MSDMNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLR
LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR
>Mature_136_residues
SDMNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRL
TQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=137, Percent_Identity=89.051094890511, Blast_Score=251, Evalue=9e-69,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14802; Mature: 14671

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDI
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHEECC
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
CEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SDMNNPSDENTGALDDLWADALNEKKATTNKSAADAVFQQLGGGDVSGAMQDIDLIMDI
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHEECC
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
CEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCE
RITDIITPSERMRRLSR
EEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2656645; 11677609; 9324257 [H]