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The map label for this gene is fliR [H]

Identifier: 29141383

GI number: 29141383

Start: 995725

End: 996519

Strand: Reverse

Name: fliR [H]

Synonym: t0896

Alternate gene names: 29141383

Gene position: 996519-995725 (Counterclockwise)

Preceding gene: 29141384

Following gene: 29141382

Centisome position: 20.8

GC content: 50.94

Gene sequence:

>795_bases
ATGATACAGGTTATAAGCGAGCAATGGCTATACTGGCTGCATCTCTATTTCTGGCCTTTGCTGCGCGTACTGGCGCTGAT
TTCAACGGCGCCCATTCTCAGCGAGCGCGCTATTCCCAAGCGGGTAAAACTGGGGTTGGGAATAATGATTACCCTCGTTA
TCGCGCCGTCGCTACCAGCAAACGATACGCCGCTTTTTTCTATTGCCGCCTTATGGCTGGCGATGCAACAAATTCTGATC
GGTATTGCGCTGGGATTTACCATGCAATTCGCCTTTGCGGCGGTGCGTACCGCAGGTGAGTTTATCGGTCTGCAAATGGG
GCTTTCCTTTGCCACCTTCGTCGACCCGGGCAGCCACTTGAATATGCCGGTTCTGGCGCGTATTATGGATATGCTCGCCA
TGCTACTGTTTCTCACCTTTAATGGCCATTTGTGGCTTATTTCGCTGCTGGTCGATACCTTCCATACTCTGCCCATCGGT
AGTAACCCGGTGAACAGTAATGCATTTATGGCGCTCGCCAGGGCCGGAGGGCTCATTTTCTTAAACGGACTGATGCTGGC
ATTGCCGGTCATTACCCTCCTGCTTACGCTCAACCTGGCGCTGGGGCTATTAAACCGCATGGCGCCGCAGCTCTCGATAT
TTGTTATCGGTTTCCCGCTTACCCTCACCGTCGGCATTATGCTGATGGCCGCGCTAATGCCATTAATTGCGCCGTTTTGC
GAACATTTATTCAGCGAAATTTTCAATTTGCTTGCTGATATTGTTAGCGAGATGCCGATAAATAATAACCCATAA

Upstream 100 bases:

>100_bases
TCGCAATTATCGTTGCCGGCCCGTGGATGCTCAACCTGCTGCTGGACTACGTACGCACTCTGTTCAGCAATTTACCTTAT
ATCATCGGATAAACAGAACG

Downstream 100 bases:

>100_bases
TTTTTATCCTGTTTTACTAAGGTTTATCCGAAAATAAATTTTAAAAAACATTCACCAGGATATATCCGCTGCCCCTTATT
TGTTTTTACTTCACTCACAT

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MIQVISEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILI
GIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG
SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
EHLFSEIFNLLADIVSEMPINNNP

Sequences:

>Translated_264_residues
MIQVISEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILI
GIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG
SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
EHLFSEIFNLLADIVSEMPINNNP
>Mature_264_residues
MIQVISEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILI
GIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG
SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
EHLFSEIFNLLADIVSEMPINNNP

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=260, Percent_Identity=88.4615384615385, Blast_Score=415, Evalue=1e-117,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28938; Mature: 28938

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQVISEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
NDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
NMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIF
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHH
LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHH
EHLFSEIFNLLADIVSEMPINNNP
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIQVISEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
NDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
NMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIF
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHH
LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHH
EHLFSEIFNLLADIVSEMPINNNP
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609 [H]