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The map label for this gene is cld [H]

Identifier: 29141294

GI number: 29141294

Start: 889332

End: 890315

Strand: Direct

Name: cld [H]

Synonym: t0794

Alternate gene names: 29141294

Gene position: 889332-890315 (Clockwise)

Preceding gene: 29141293

Following gene: 29141304

Centisome position: 18.56

GC content: 51.52

Gene sequence:

>984_bases
ATGACAGTGGATAGTAATGCGTCTTCCGGGCGTGGGAACGATCCGGAACAGATTGATTTGATTGAGTTATTGCTACAGTT
ATGGCGTGGGAAGATGACCATTATTGTAGCCGTTATTATCGCCATTTTGCTGGCCGTAGGCTACCTGATGATAGCCAAAG
AAAAATGGACATCCACGGCGATTATTACCCAACCTGATGCCGCGCAGGTTGCCACCTATACCAACGCGCTCAACGTCTTG
TATGGCGGGAATGCCCCCAAAATCTCTGAAGTGCAGGCGAATTTTATAAGCCGCTTTAGTTCTGCGTTTTCCGCATTATC
GGAAGCGCTGGATAATCAGAAAGAGCGGGAAAAGCTCACCATTGAACAGTCGGTAAAGGGGCAGACGCTGCCGCTCTCGG
TTTCTTATGTGAGCACTACCGCTGAAGGGGCGCAGCGTCGGCTGGCGGAATATATCCAACAGGTGGATGAAGAGGTCGCT
AAGGAACTGGAAGTTGACCTGAAAGATAACATCACGCTGCAAACCAAAACGTTGCAGGAGTCCCTTGAGACGCAGGAAGT
TGTGGCGCAGGAGCAAAAAGATCTGCGTATTAAGCAAATCGAAGAAGCGTTGCGCTATGCGGATGAGGCCAAAATCACGC
AGCCGCAGATTCAGCAAACCCAGGATGTTACCCAGGACACGATGTTCCTGTTGGGGAGCGATGCGCTAAAATCGATGATA
CAGAACGAAGCGACGCGTCCACTGGTCTTTTCTCCGGCCTATTACCAGACGAAGCAGACACTGCTGGACATTAAAAATCT
GAAAGTGACTGCCGATACGGTGCACGTCTATCGTTATGTGATGAAGCCGACGCTGCCGGTCCGTCGCGATAGCCCGAAAA
CAGCCATTACCCTCGTGCTGGCTGTGTTGCTGGGCGGGATGATCGGCGCCGGGATTGTGCTGGGGCGCAATGCGCTACGT
AGCTATAAGCCAAAAGCCTTGTAA

Upstream 100 bases:

>100_bases
AATGGAAATAATGTCTGATTTTTATCATTAATCCTATGGCATATATTTTCTTTATGACTACACTGTCTCCAGCTTCATCC
TTTTTTTAGTTAGGGTATCT

Downstream 100 bases:

>100_bases
GCTTCTTTGCCGGATGGTGGTCGGCTTCGAAAGGTAAAATTTCTCATTAAAAAACCGGGCATTGCCCGGTTTTTTTACGC
TTATTGATGACGCTTACGAA

Product: polysaccharide chain length regulator

Products: NA

Alternate protein names: Polysaccharide antigen chain regulator [H]

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MTVDSNASSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTAIITQPDAAQVATYTNALNVL
YGGNAPKISEVQANFISRFSSAFSALSEALDNQKEREKLTIEQSVKGQTLPLSVSYVSTTAEGAQRRLAEYIQQVDEEVA
KELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQTQDVTQDTMFLLGSDALKSMI
QNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVMKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALR
SYKPKAL

Sequences:

>Translated_327_residues
MTVDSNASSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTAIITQPDAAQVATYTNALNVL
YGGNAPKISEVQANFISRFSSAFSALSEALDNQKEREKLTIEQSVKGQTLPLSVSYVSTTAEGAQRRLAEYIQQVDEEVA
KELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQTQDVTQDTMFLLGSDALKSMI
QNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVMKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALR
SYKPKAL
>Mature_326_residues
TVDSNASSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTAIITQPDAAQVATYTNALNVLY
GGNAPKISEVQANFISRFSSAFSALSEALDNQKEREKLTIEQSVKGQTLPLSVSYVSTTAEGAQRRLAEYIQQVDEEVAK
ELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQTQDVTQDTMFLLGSDALKSMIQ
NEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVMKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALRS
YKPKAL

Specific function: Confers a modal distribution of chain length on the O- antigen component of lipopolysaccharide (LPS). Gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20 [H]

COG id: COG3765

COG function: function code M; Chain length determinant protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the wzzB/cld/rol family [H]

Homologues:

Organism=Escherichia coli, GI87082029, Length=326, Percent_Identity=72.0858895705521, Blast_Score=474, Evalue=1e-135,
Organism=Escherichia coli, GI87082332, Length=333, Percent_Identity=27.027027027027, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786802, Length=348, Percent_Identity=27.8735632183908, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003856 [H]

Pfam domain/function: PF02706 Wzz [H]

EC number: NA

Molecular weight: Translated: 36231; Mature: 36100

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVDSNASSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
IITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSAFSALSEALDNQKEREKLT
EEECCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
IEQSVKGQTLPLSVSYVSTTAEGAQRRLAEYIQQVDEEVAKELEVDLKDNITLQTKTLQE
HHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHH
SLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQTQDVTQDTMFLLGSDALKSMI
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
QNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVMKPTLPVRRDSPKTAITLVL
HCCCCCCEEECCHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AVLLGGMIGAGIVLGRNALRSYKPKAL
HHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TVDSNASSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
IITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSAFSALSEALDNQKEREKLT
EEECCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
IEQSVKGQTLPLSVSYVSTTAEGAQRRLAEYIQQVDEEVAKELEVDLKDNITLQTKTLQE
HHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHH
SLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQTQDVTQDTMFLLGSDALKSMI
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
QNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVMKPTLPVRRDSPKTAITLVL
HCCCCCCEEECCHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AVLLGGMIGAGIVLGRNALRSYKPKAL
HHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7682279; 1379582; 11677609 [H]