| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
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The map label for this gene is yojN [H]
Identifier: 29141110
GI number: 29141110
Start: 677786
End: 680455
Strand: Reverse
Name: yojN [H]
Synonym: t0596
Alternate gene names: 29141110
Gene position: 680455-677786 (Counterclockwise)
Preceding gene: 29141116
Following gene: 29141109
Centisome position: 14.2
GC content: 51.54
Gene sequence:
>2670_bases ATGAGTCAGTCTGACACAACGGTCTCTACCCGATTCTCCCTTCTACCGGGAAGCATTACCCGTTTCTTCTTATTGCTGAT CATTGTGCTGCTGGTAACGATGGGCGTTATGGTACAGAGCGCCGTCAACGCCTGGTTGAAAGACAAAAGCTATCAAATTG TCGATATCACTCACGCTATTCATAAACGCGTGGACACCTGGCGGTATGTTACCTGGCAAATTTATGACAACATCGCCGCG ACCACTACGCCATCGACAGGTGAAGGACTTCAGGAAACGCGTCTGAAACAGGATGTGTATTATCTTGAAAAGCCGCGACG TAAAACTGAAGCGCTGATTTTCGGTTCCCATGACAGCGCCACGCTGGAAATGACGCAGCGTATGTCAACTTATCTGGATA CGCTGTGGGGCGCGGAAAACGTGCCGTGGTCAATGTATTACCTCAACGGACAGGATAACAGCCTGATTCTTATCTCTACC CTACCGTTGAAAGATCTCTCTTCCGGCTTTAAAGAGTCCACTATTGGCAATATCGTCGATTCCCGCCGGGCAGAGATGTT GCAGCAGGCGAATGCGCTGGATGAGCGCGAAAGTTTCTCCTCATTGCGAAAACTGGCCTGGCAAAACGGTCACTATTTTA CGCTGCGCACGACCTTCAATCAGCCAGGACATCTGGCAACCGTGGTGGCGTTTGATCTGCCCATTAATGATTTAATCCCG CCGGGAATGCCGCTGGACAGTTTTCGGATAGAGCCTGACGCAACCCAGACGACGGGGCGAAGCAGTGAAAAGGAAGCGCC AGATAGCGTCACGATTAGCTTTAACGGTTCAAAAATTGAGATCTCCTCAGCGCTTAACTCTACCGGAATGCGCCTGATCT GGCAGGTACCGTTCGGTACGCTTTTGCTTGATACGTTGCAAAATATTTTGCTGCCTTTACTGCTGAACATCGGGCTGCTG GCGTTGGCGTTATTTGGCTACGCCACGTTCCGTCATCAGCCGGGACGGTCGACGGAATCGACATCCGGCAACGCGGCGAA TAATGAGCTTCGCGTCTTACGCGCCATTAATGAAGAGATCGTTTCTCTGCTGCCGCTGGGTCTGCTGGTCTACGATCAGG AAGGCAACCGCACCGTGATCAGCAATAAAATCGCCGATCATCTGTTGCCGCATCTTAACCTGCAAAATATTACCAGCATG GCGGAGCAGCATCAGGGCGTGATTCAGGCGACAATTAATAACGAACTGTATGAGATCCGTCTGTTTCGCAGCCAGATCGC CCCCCGCACGCAGATCTTTATTATTCGCGATCAGGACCGGGAAGTGCTGGTGAATAAGAAGCTTAAACAGGCGCAGCGTT TGTATGAGAAGAATCAGCAGGGCCGCGCCGCCTTTATGCAAAATATCAGCAACACGCTTAAAGAGCCCGTACGCCAACTG GCGGTTAACGCCGCGGCAGTCACCACGCCGGAAAGCCTGAAACTGGCGGATCAGGCGGATGTATTAGTACGTATGATCGA TGAAATCCAACTGGCGAATATGCTGGAAAATGACGCATGGAAAAGCGAAGCCACGCTGTTCTCCCTGCAGGATCTTATTG ACGAAGTCGTGCCGGAAGTGCTGCCCGCCATTAAGCGTAAAGGGCTGCAACTGCTGATTAATAACCATCTTAGCGGCAAC GATGAACGCTGGGGCGATCGCGACGCCCTGCGCCGGATTTTGCTGCTGTTGATTCAGTATGCCGTCACGACGACCGCTAT GGGTAAAATTACGCTTGAAGTCGAGCAGGATGAATCTATCGCGGAGCGTCTGACTTTCCGTATTCTGGATACGGGCGAAG GCGTAACGTTAAACGAGATTGATAATCTGCATTTCCCGTATATGAATGAAACGCAGGGCGACCGTTACGGCAAAGCGAAT CCGCTCACCTTCTGGCTGTGCAATCAACTGGCGCGCAAACTGGGCGGTCATCTCAACATTAAAGCGCGAGAAACGCTGGG CACGCGCTATACCGTTCATGTCAAAATGCTTCCTCACGATCAGCATACTCAGGTCGAAGAGCGCCTGCTGGACGACGTGA GCGTGATGGTCGATGTGACGTCCAACGAGGTTCGCGCGATTGTGCTGCGTCAGTTAGAAAACTGGGGCGCCACCTGCATC ACGCCGGATGAAAGGCAGATAAGTCAAGAATATGATCTCTTTTTAACGGATAATCCGTCTAATCTTACTGCCTCGGGCTT GCTTTTAAGCGATGATGAGTCAGGCGTGCGGAAAATTGGCCCGGGTCAGTTGCGCGTCAACTTTAATATGAGCAATGCTA TGCAGGAAGCTGTACTACAACTTATCGAAGAGCAGCTGGCGCAGGAAGAGATTCCCGCCTCCCCGCTCGGCGGAGATGAA AATGCCGAGCTTCATGCCAGCGGCTATTATGCGCTATTTGTAGACACAGTACCGGATGATGTTAAGAGGTTGTATACTGA GGCGGCAACCAGCGATTTCGCTGCGCTGGCCCAAACGGCCCACCGCCTGAAAGGGGTGTTTGCCATGCTTAATCTGGTAC CCGGCAAGCAGTTATGTGTAACGCTGGAACATCTGATTCGTGAGAAAGATGCTCCAGGTATAGAAAAATATATCAGCGAC ATTGACGCCTACGTCAAAAGCTTGCTGTAG
Upstream 100 bases:
>100_bases TGTTAAGTTGCCCGGCATGACGTAAGAGTCTGGAAATTCATTCATTACCCTTTATACTGCCCTTCACCTTCAGCGTTGCT TTTACAGGTCGTAAACATAA
Downstream 100 bases:
>100_bases CAAAGTAGCCCAATACATGAACAATATGAACATAATTATTGCCGATGACCACCCGATTGTACTGTTCGGTATTCGCAAAT CACTTGAACAAATCGAGTGG
Product: phosphotransfer intermediate protein in two-component regulatory system with RcsBC
Products: NA
Alternate protein names: Phosphotransfer intermediate RcsD [H]
Number of amino acids: Translated: 889; Mature: 888
Protein sequence:
>889_residues MSQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIHKRVDTWRYVTWQIYDNIAA TTTPSTGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILIST LPLKDLSSGFKESTIGNIVDSRRAEMLQQANALDERESFSSLRKLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIP PGMPLDSFRIEPDATQTTGRSSEKEAPDSVTISFNGSKIEISSALNSTGMRLIWQVPFGTLLLDTLQNILLPLLLNIGLL ALALFGYATFRHQPGRSTESTSGNAANNELRVLRAINEEIVSLLPLGLLVYDQEGNRTVISNKIADHLLPHLNLQNITSM AEQHQGVIQATINNELYEIRLFRSQIAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMQNISNTLKEPVRQL AVNAAAVTTPESLKLADQADVLVRMIDEIQLANMLENDAWKSEATLFSLQDLIDEVVPEVLPAIKRKGLQLLINNHLSGN DERWGDRDALRRILLLLIQYAVTTTAMGKITLEVEQDESIAERLTFRILDTGEGVTLNEIDNLHFPYMNETQGDRYGKAN PLTFWLCNQLARKLGGHLNIKARETLGTRYTVHVKMLPHDQHTQVEERLLDDVSVMVDVTSNEVRAIVLRQLENWGATCI TPDERQISQEYDLFLTDNPSNLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEEIPASPLGGDE NAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCVTLEHLIREKDAPGIEKYISD IDAYVKSLL
Sequences:
>Translated_889_residues MSQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIHKRVDTWRYVTWQIYDNIAA TTTPSTGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILIST LPLKDLSSGFKESTIGNIVDSRRAEMLQQANALDERESFSSLRKLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIP PGMPLDSFRIEPDATQTTGRSSEKEAPDSVTISFNGSKIEISSALNSTGMRLIWQVPFGTLLLDTLQNILLPLLLNIGLL ALALFGYATFRHQPGRSTESTSGNAANNELRVLRAINEEIVSLLPLGLLVYDQEGNRTVISNKIADHLLPHLNLQNITSM AEQHQGVIQATINNELYEIRLFRSQIAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMQNISNTLKEPVRQL AVNAAAVTTPESLKLADQADVLVRMIDEIQLANMLENDAWKSEATLFSLQDLIDEVVPEVLPAIKRKGLQLLINNHLSGN DERWGDRDALRRILLLLIQYAVTTTAMGKITLEVEQDESIAERLTFRILDTGEGVTLNEIDNLHFPYMNETQGDRYGKAN PLTFWLCNQLARKLGGHLNIKARETLGTRYTVHVKMLPHDQHTQVEERLLDDVSVMVDVTSNEVRAIVLRQLENWGATCI TPDERQISQEYDLFLTDNPSNLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEEIPASPLGGDE NAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCVTLEHLIREKDAPGIEKYISD IDAYVKSLL >Mature_888_residues SQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIHKRVDTWRYVTWQIYDNIAAT TTPSTGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILISTL PLKDLSSGFKESTIGNIVDSRRAEMLQQANALDERESFSSLRKLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPP GMPLDSFRIEPDATQTTGRSSEKEAPDSVTISFNGSKIEISSALNSTGMRLIWQVPFGTLLLDTLQNILLPLLLNIGLLA LALFGYATFRHQPGRSTESTSGNAANNELRVLRAINEEIVSLLPLGLLVYDQEGNRTVISNKIADHLLPHLNLQNITSMA EQHQGVIQATINNELYEIRLFRSQIAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMQNISNTLKEPVRQLA VNAAAVTTPESLKLADQADVLVRMIDEIQLANMLENDAWKSEATLFSLQDLIDEVVPEVLPAIKRKGLQLLINNHLSGND ERWGDRDALRRILLLLIQYAVTTTAMGKITLEVEQDESIAERLTFRILDTGEGVTLNEIDNLHFPYMNETQGDRYGKANP LTFWLCNQLARKLGGHLNIKARETLGTRYTVHVKMLPHDQHTQVEERLLDDVSVMVDVTSNEVRAIVLRQLENWGATCIT PDERQISQEYDLFLTDNPSNLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEEIPASPLGGDEN AELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCVTLEHLIREKDAPGIEKYISDI DAYVKSLL
Specific function: May serves as a phosphotransfer intermediate between RcsC and RcsB. It may acquire a phosphoryl group at His-842 from RcsC 'Asp-866' and transmit it to 'Asp-56' of RcsB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HPt domain [H]
Homologues:
Organism=Escherichia coli, GI1788545, Length=890, Percent_Identity=84.8314606741573, Blast_Score=1498, Evalue=0.0, Organism=Escherichia coli, GI145693157, Length=408, Percent_Identity=23.0392156862745, Blast_Score=89, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR008207 - InterPro: IPR005467 [H]
Pfam domain/function: PF02518 HATPase_c; PF01627 Hpt [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 99811; Mature: 99680
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS50894 HPT ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAI CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHH HKRVDTWRYVTWQIYDNIAATTTPSTGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDSA HHHCCHHEEEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCH TLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILISTLPLKDLSSGFKESTIGNIVD HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHCCHHHHHHHHHHH SRRAEMLQQANALDERESFSSLRKLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCHHHCCC PGMPLDSFRIEPDATQTTGRSSEKEAPDSVTISFNGSKIEISSALNSTGMRLIWQVPFGT CCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEHHHHCCCCCEEEEECCHHH LLLDTLQNILLPLLLNIGLLALALFGYATFRHQPGRSTESTSGNAANNELRVLRAINEEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH VSLLPLGLLVYDQEGNRTVISNKIADHLLPHLNLQNITSMAEQHQGVIQATINNELYEIR HHHHCCCEEEEECCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCEEEEE LFRSQIAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMQNISNTLKEPVRQL EHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH AVNAAAVTTPESLKLADQADVLVRMIDEIQLANMLENDAWKSEATLFSLQDLIDEVVPEV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH LPAIKRKGLQLLINNHLSGNDERWGDRDALRRILLLLIQYAVTTTAMGKITLEVEQDESI HHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECEEEEEECCCHHH AERLTFRILDTGEGVTLNEIDNLHFPYMNETQGDRYGKANPLTFWLCNQLARKLGGHLNI HHHHEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE KARETLGTRYTVHVKMLPHDQHTQVEERLLDDVSVMVDVTSNEVRAIVLRQLENWGATCI EEHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEE TPDERQISQEYDLFLTDNPSNLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQ CCCHHHHHCCCCEEEECCCCCCEECCEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHH LIEEQLAQEEIPASPLGGDENAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTA HHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH HRLKGVFAMLNLVPGKQLCVTLEHLIREKDAPGIEKYISDIDAYVKSLL HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC >Mature Secondary Structure SQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAI CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHH HKRVDTWRYVTWQIYDNIAATTTPSTGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDSA HHHCCHHEEEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCH TLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILISTLPLKDLSSGFKESTIGNIVD HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCHHHHHCCHHHHHHHHHHH SRRAEMLQQANALDERESFSSLRKLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCHHHCCC PGMPLDSFRIEPDATQTTGRSSEKEAPDSVTISFNGSKIEISSALNSTGMRLIWQVPFGT CCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEHHHHCCCCCEEEEECCHHH LLLDTLQNILLPLLLNIGLLALALFGYATFRHQPGRSTESTSGNAANNELRVLRAINEEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH VSLLPLGLLVYDQEGNRTVISNKIADHLLPHLNLQNITSMAEQHQGVIQATINNELYEIR HHHHCCCEEEEECCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCEEEEE LFRSQIAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRAAFMQNISNTLKEPVRQL EHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH AVNAAAVTTPESLKLADQADVLVRMIDEIQLANMLENDAWKSEATLFSLQDLIDEVVPEV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH LPAIKRKGLQLLINNHLSGNDERWGDRDALRRILLLLIQYAVTTTAMGKITLEVEQDESI HHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECEEEEEECCCHHH AERLTFRILDTGEGVTLNEIDNLHFPYMNETQGDRYGKANPLTFWLCNQLARKLGGHLNI HHHHEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE KARETLGTRYTVHVKMLPHDQHTQVEERLLDDVSVMVDVTSNEVRAIVLRQLENWGATCI EEHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEE TPDERQISQEYDLFLTDNPSNLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQ CCCHHHHHCCCCEEEECCCCCCEECCEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHH LIEEQLAQEEIPASPLGGDENAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTA HHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH HRLKGVFAMLNLVPGKQLCVTLEHLIREKDAPGIEKYISDIDAYVKSLL HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2404948; 7984428; 11758943; 11309126 [H]