Click here to switch to the map view.

The map label for this gene is yfgA [H]

Identifier: 29140864

GI number: 29140864

Start: 382224

End: 383198

Strand: Direct

Name: yfgA [H]

Synonym: t0332

Alternate gene names: 29140864

Gene position: 382224-383198 (Clockwise)

Preceding gene: 29140863

Following gene: 29140865

Centisome position: 7.98

GC content: 56.82

Gene sequence:

>975_bases
ATGAATACTGAAGCCACGCACGACCAAAATGAAGCACAAACCACCGGCGTTCGTCTGCGCAATGCCCGTGAACAACTCGG
ACTCAGCCAGCAGGCTGTCGCTGAGCGACTTTGCCTGAAGGTTTCTACGGTACGCGATATTGAAGAAGATAAGGCGCCGT
CCGATCTTGCTTCAACCTTCCTGCGCGGATATATCCGCTCATATGCGCGTCTGGTGCATGTTCCAGAAGAGGAACTGCTG
CCGGGGCTGGAAAAACAAGCTCCGCTGCGCGCCGCTAAAGTCGCCCCGATGCAGAGTTTCTCATTAGGAAAGCGTCGTAA
AAAACGCGACGGCTGGTTAATGTCTTTTACCTGGCTGGTACTGTTTGTGGTCGTAGGGCTGACCGGCGCCTGGTGGTGGC
AGAACCACAAGGCGCAGCAGGAAGAGATCACGACAATGGCCGATCAAAGCACGGCTGAACTGAACGCAGATAAAGACAGC
GGCCAAAGCGTACCGCTGGACACCAGTGCCGCGACAAGCCAGGATACGACGCCAGCGCAAACGGCTCCGGCTCCTGCGAC
GCCGGTTGATTCGACGGCGGCAACGCAAAATACGGTAGTCGCGCCTTCGCAGGCGAATGTCGATACGGCTGCGACATCTG
CCGCGCCAGCGGCAACGGAAACGCCGTCCGCGCTGCCGACCAGTCAGGCTGGCGTAGCGGCGCCTGCTGCCGATCCGAAC
GCGCTGGTGATGAATTTTACCGCTGACTGTTGGCTCGAAGTCACTGACGCCACGGGTAAAAAACTGTTTAGCGGTATGCA
GCGTAAAGATGGCAATTTAAACCTAACCGGTCAGGCGCCTTATAAACTTAAAATTGGCGCGCCGGCCGCGGTGCAGATCC
AGTATCAAGGAAAACCTGTCGATCTGAGCCGCTTTATCAGAACTAATCAGGTTGCGCGTCTGACCCTTAATGCCGAACCG
ACACCGGCGCAGTAA

Upstream 100 bases:

>100_bases
CTGACTAAAGGTTAACTAACCTGATGTTTCGCGGTGTGGGCGGGCATTACGGCTCGTCGGCGCCTGAATCCTAATTTACA
CGTACCTGTAGCTGTAGCGA

Downstream 100 bases:

>100_bases
CAGACGGGTAACGCGGGAGATTTTTCATGCATAACCAGGCTCCGATTCAACGTAGAAAATCGACACGTATTTACGTTGGG
AATGTGCCGATTGGCGATGG

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNTEATHDQNEAQTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPSDLASTFLRGYIRSYARLVHVPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLVLFVVVGLTGAWWWQNHKAQQEEITTMADQSTAELNADKDS
GQSVPLDTSAATSQDTTPAQTAPAPATPVDSTAATQNTVVAPSQANVDTAATSAAPAATETPSALPTSQAGVAAPAADPN
ALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEP
TPAQ

Sequences:

>Translated_324_residues
MNTEATHDQNEAQTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPSDLASTFLRGYIRSYARLVHVPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLVLFVVVGLTGAWWWQNHKAQQEEITTMADQSTAELNADKDS
GQSVPLDTSAATSQDTTPAQTAPAPATPVDSTAATQNTVVAPSQANVDTAATSAAPAATETPSALPTSQAGVAAPAADPN
ALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEP
TPAQ
>Mature_324_residues
MNTEATHDQNEAQTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPSDLASTFLRGYIRSYARLVHVPEEELL
PGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLVLFVVVGLTGAWWWQNHKAQQEEITTMADQSTAELNADKDS
GQSVPLDTSAATSQDTTPAQTAPAPATPVDSTAATQNTVVAPSQANVDTAATSAAPAATETPSALPTSQAGVAAPAADPN
ALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEP
TPAQ

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=344, Percent_Identity=81.1046511627907, Blast_Score=530, Evalue=1e-152,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 34779; Mature: 34779

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEATHDQNEAQTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPSDLASTF
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LRGYIRSYARLVHVPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLV
HHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
LFVVVGLTGAWWWQNHKAQQEEITTMADQSTAELNADKDSGQSVPLDTSAATSQDTTPAQ
HHHHHHCCCHHHHCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAPAPATPVDSTAATQNTVVAPSQANVDTAATSAAPAATETPSALPTSQAGVAAPAADPN
CCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPV
EEEEEECCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCEEEEECCCEEEEEEECCCCC
DLSRFIRTNQVARLTLNAEPTPAQ
CHHHHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MNTEATHDQNEAQTTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPSDLASTF
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LRGYIRSYARLVHVPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMSFTWLV
HHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
LFVVVGLTGAWWWQNHKAQQEEITTMADQSTAELNADKDSGQSVPLDTSAATSQDTTPAQ
HHHHHHCCCHHHHCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
TAPAPATPVDSTAATQNTVVAPSQANVDTAATSAAPAATETPSALPTSQAGVAAPAADPN
CCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ALVMNFTADCWLEVTDATGKKLFSGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPV
EEEEEECCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCEEEEECCCEEEEEEECCCCC
DLSRFIRTNQVARLTLNAEPTPAQ
CHHHHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA