Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
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Accession | NC_004631 |
Length | 4,791,961 |
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The map label for this gene is yaeT [H]
Identifier: 29140764
GI number: 29140764
Start: 259255
End: 261666
Strand: Direct
Name: yaeT [H]
Synonym: t0225
Alternate gene names: 29140764
Gene position: 259255-261666 (Clockwise)
Preceding gene: 29140763
Following gene: 29140765
Centisome position: 5.41
GC content: 52.65
Gene sequence:
>2412_bases ATGGCGATGAAAAAGTTGCTCATAGCGTCGCTGCTGTTCAGCAGCGCCACCGTATACGGTGCTGAAGGGTTCGTAGTGAA GGACATTCATTTCGAAGGCCTGCAGCGAGTCGCCGTTGGTGCGGCTCTCCTCAGTATGCCGGTGCGCACAGGCGACACGG TTAATGATGAAGATATCAGTAACACCATTCGCGCTCTGTTCGCCACCGGCAACTTTGAGGACGTCCGCGTCCTGCGCGAT GGTAATACCCTTCTGGTTCAGGTAAAAGAACGTCCGACCATTGCCAGCATCACTTTCTCCGGGAACAAGTCGGTGAAAGA TGACATGCTCAAGCAAAACCTCGAAGCGTCTGGCGTACGTGTTGGCGAGTCTCTGGATCGCACCACGCTGTCTGATATCG AAAAAGGTCTGGAAGACTTTTACTATAGCGTAGGTAAATACAGCGCCAGCGTTAAGGCGGTCGTCACGCCGCTACCGCGC AACCGTGTTGATCTTAAACTGGTGTTCCAGGAGGGCGTATCGGCGAAGATCCAACAGATCAACATCGTCGGTAACCATGC CTTTAGCACCGAAGAACTCATTTCTCATTTCCAGTTGCGTGACGAAGTGCCGTGGTGGAACGTCGTCGGCGATCGTAAAT ACCAGAAACAGAAGCTGGCGGGCGACCTTGAAACCTTGCGCAGCTACTATCTGGATCGCGGCTACGCGCGTTTCAATATT GACTCCACGCAAGTGAGTCTGACGCCGGATAAGAAAGGGATCTACATCACCGTCAATATCACCGAAGGCGATCAGTACAA GCTTTCCGGGGTTCAGGTGAGCGGTAACCTGGCCGGACATTCCGCTGAAATTGAGAAACTGACGAAAATTGAACCGGGCG AGCTCTATAACGGCACCAAAGTGACCAAAATGGAAGATGACATCAAAAAGCTTCTGGGTCGCTATGGTTACGCCTATCCG CGCGTGCAGTCACAGCCTGAAATTAACGATGCTGACAAAACCGTAAAACTGCGCGTGAACGTCGATGCGGGCAACCGTTT CTACGTGCGTAAGATCCGCTTTGAAGGCAACGATACCTCAAAAGATTCCGTTCTGCGCCGTGAAATGCGCCAGATGGAAG GGGCGTGGCTGGGCAGCGACCTGGTTGACCAGGGGAAAGAGCGTCTGAACCGTCTCGGCTTCTTTGAAACCGTCGACACC GACACGCAGCGCGTTCCGGGGAGCCCGGATCAGGTTGATGTGGTGTACAAGGTGAAAGAGCGTAACACCGGTAGCTTCAA CTTCGGTATCGGTTACGGTACAGAAAGCGGCGTGAGCTTCCAGGCCGGCGTTCAGCAGGACAACTGGTTAGGTACCGGTT ATTCCGTGGGGATTAACGGTACCAAAAATGACTACCAGACCTACAGCGAACTGTCCGTTACTAACCCATACTTTACCGTT GACGGCGTGAGCCTCGGTGGTCGTATCTTCTATAACGACTTTGAAGCGGATGATGCCGACCTGTCCGACTATACCAACAA GAGTTACGGTACGGATGTGACGCTTGGCTTCCCCATCAACGAGTACAACACGTTGCGTGCTGGTCTGGGCTATGTCCATA ACAAACTGTCCAACATGCAGCCGCAGATCGCGATGGATCGTTATCTTGAATCGATGGGCGACCCTGATGCCAGCGATTTT GCCGCTGACGACTTCACCTTTAACTACGGCTGGACCTATAACAAGCTTGACCGTGGTTATTTCCCGACGGACGGCTCGCG AGTCAACCTGACGGGTAAGGTGACGATTCCAGGTTCCGACAACGAATACTACAAAGTGTCGCTGGATACCGCGACCTATG TGCCTATTGATAACGACCACAAGTGGGTGGTTCTGGGGCGTACTCGTTGGGGTTACGGCGATGGTTTAGGCGGCAAGGAA ATGCCGTTCTATGAGAACTTCTATGCCGGTGGTTCCAGTACCGTGCGTGGTTTCCAGTCGAATACTATCGGCCCGAAAGC GGTCTATAAAAATGGCGCCCACACTAGTTGGGACGATGATGATGATTACGAAGACTGTACTCAGGAATCAGGCTGTAAAT CAGATGATGCGGTAGGTGGTAATGCCATGGCTGTCGCCAGCCTGGAATTTATTACCCCGACGCCGTTCATCAGCGAAAAG TATGCCAACTCGGTTCGTACCTCCTTCTTCTGGGATATGGGTACCGTTTGGGATACGAACTGGGATCCGTCATCTGCGCC GTCAGATGTACCGGATTACAGCGATCCAGGCAACATCCGTATGTCCGCGGGTATCGCATTACAATGGATGTCCCCATTGG GGCCGTTGGTCTTCTCCTACGCCCAGCCGTTTAAAAAGTACGATGGAGACAAAGCCGAGCAGTTCCAGTTTAACATTGGT AAAACCTGGTAA
Upstream 100 bases:
>100_bases CGCATTGGCTCGATTTTGCTGGTGTTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTGTAAGAGAGTTAGTT AGGAAGAACGCATAATAACG
Downstream 100 bases:
>100_bases TTGTTCACTGCAAAGGAATGCATTGGTAGTGTAGCGATGACTTTTGGCGATGCCCCCAGGGATCGCCAGGCCACGCAAAG AGCTGTACCTTCGGGTGCAA
Product: outer membrane protein assembly factor YaeT
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 803; Mature: 802
Protein sequence:
>803_residues MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPR NRVDLKLVFQEGVSAKIQQINIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP RVQSQPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDT DTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYSVGINGTKNDYQTYSELSVTNPYFTV DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQPQIAMDRYLESMGDPDASDF AADDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVSLDTATYVPIDNDHKWVVLGRTRWGYGDGLGGKE MPFYENFYAGGSSTVRGFQSNTIGPKAVYKNGAHTSWDDDDDYEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEK YANSVRTSFFWDMGTVWDTNWDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIG KTW
Sequences:
>Translated_803_residues MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPR NRVDLKLVFQEGVSAKIQQINIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP RVQSQPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDT DTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYSVGINGTKNDYQTYSELSVTNPYFTV DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQPQIAMDRYLESMGDPDASDF AADDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVSLDTATYVPIDNDHKWVVLGRTRWGYGDGLGGKE MPFYENFYAGGSSTVRGFQSNTIGPKAVYKNGAHTSWDDDDDYEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEK YANSVRTSFFWDMGTVWDTNWDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIG KTW >Mature_802_residues AMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDG NTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRN RVDLKLVFQEGVSAKIQQINIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNID STQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPR VQSQPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTD TQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYSVGINGTKNDYQTYSELSVTNPYFTVD GVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQPQIAMDRYLESMGDPDASDFA ADDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVSLDTATYVPIDNDHKWVVLGRTRWGYGDGLGGKEM PFYENFYAGGSSTVRGFQSNTIGPKAVYKNGAHTSWDDDDDYEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEKY ANSVRTSFFWDMGTVWDTNWDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGK TW
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=811, Percent_Identity=92.9716399506782, Blast_Score=1529, Evalue=0.0,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 89467; Mature: 89336
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS CCHHHHHHHHHHHHCCEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH NTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR HHHHHHEECCCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCCCEE VGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQI CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEE NIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI EEEECCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTK CCCEEEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCE VTKMEDDIKKLLGRYGYAYPRVQSQPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTS EEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCC KDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEC RNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYSVGINGTKNDYQTYSELSVTNPYFTV CCCCCEEEEEECCCCCCCEEEECCCCCCEECCCEEEECCCCCCHHHHHHHEEECCCEEEE DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQ ECCEECCEEEEECCCCCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC PQIAMDRYLESMGDPDASDFAADDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSD CHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEECCCCCCCCCCCCCEEEEEEEEEECCCC NEYYKVSLDTATYVPIDNDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQS CCEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCHHCCCCCC NTIGPKAVYKNGAHTSWDDDDDYEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEK CCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHHH YANSVRTSFFWDMGTVWDTNWDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSY HHHHHHHHEEEECCCEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHHHH AQPFKKYDGDKAEQFQFNIGKTW HHHHHHCCCCCCCEEEEECCCCC >Mature Secondary Structure AMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS CHHHHHHHHHHHHCCEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH NTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR HHHHHHEECCCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCCCEE VGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQI CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEE NIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI EEEECCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEC DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTK CCCEEEECCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCE VTKMEDDIKKLLGRYGYAYPRVQSQPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTS EEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCC KDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEC RNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYSVGINGTKNDYQTYSELSVTNPYFTV CCCCCEEEEEECCCCCCCEEEECCCCCCEECCCEEEECCCCCCHHHHHHHEEECCCEEEE DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQ ECCEECCEEEEECCCCCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC PQIAMDRYLESMGDPDASDFAADDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSD CHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEECCCCCCCCCCCCCEEEEEEEEEECCCC NEYYKVSLDTATYVPIDNDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQS CCEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCHHCCCCCC NTIGPKAVYKNGAHTSWDDDDDYEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEK CCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHHH YANSVRTSFFWDMGTVWDTNWDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSY HHHHHHHHEEEECCCEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHHHH AQPFKKYDGDKAEQFQFNIGKTW HHHHHHCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA