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The map label for this gene is ppdD [H]

Identifier: 29140691

GI number: 29140691

Start: 170852

End: 171289

Strand: Reverse

Name: ppdD [H]

Synonym: t0150

Alternate gene names: 29140691

Gene position: 171289-170852 (Counterclockwise)

Preceding gene: 29140692

Following gene: 29140690

Centisome position: 3.57

GC content: 53.42

Gene sequence:

>438_bases
ATGGAAAAACAACGCGGTTTCACGCTTATCGAACTGATGGTCGTTATTGGCATCATCGCCATTTTAAGCGCCATTGGCAT
TCCGGCTTACCAGAACTATCTGCGTAAAGCGGCGCTGACGGATATGTTGCAAACATTTGTCCCCTACCGTACTGCCGTCG
AACTCTGCGCTCTGGAACATGGTGGGACGAGCACATGCGATGCGGGCGTCAACGGTATCCCCTCGCCCGTCATCACCCGT
TATGTTTCGGGCATGAGCGTGGAAAAAGGCGTCATCACGCTTACCGGTCAGGAGAGTCTGAGCGGGCTTAGCGTCATCAT
GACGCCCGCCTGGGACAATGCTAACGGCATTACCGGCTGGACGCGTAACTGCAATATTCAAAGCGACAGCGCGTTACAAC
AGGCTTGTGAAGATGTCTTCCGTTTTGACGCCAACTAA

Upstream 100 bases:

>100_bases
GCGAAAATCTTCAGAATCCGCCTTCCCGTTTTACCTTTTGCCGCTCGCCCGCTCTTCCCTTGTTTGCCACAGTAGCGCCG
GCTAACTCAAGGAGCGAACA

Downstream 100 bases:

>100_bases
GGAGACAAGATGAAAGACGCTCAGCTCAACACCTTGTGTCAACGTCATCAGGCTGTACTGATCAATAGCGCCAGCAACAG
TATCACTGTTGCGGTGGTCG

Product: major pilin subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITR
YVSGMSVEKGVITLTGQESLSGLSVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN

Sequences:

>Translated_145_residues
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITR
YVSGMSVEKGVITLTGQESLSGLSVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN
>Mature_145_residues
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITR
YVSGMSVEKGVITLTGQESLSGLSVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=143, Percent_Identity=89.5104895104895, Blast_Score=273, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 15604; Mature: 15604

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GGTSTCDAGVNGIPSPVITRYVSGMSVEKGVITLTGQESLSGLSVIMTPAWDNANGITGW
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCC
TRNCNIQSDSALQQACEDVFRFDAN
CCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GGTSTCDAGVNGIPSPVITRYVSGMSVEKGVITLTGQESLSGLSVIMTPAWDNANGITGW
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCC
TRNCNIQSDSALQQACEDVFRFDAN
CCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]