Definition | Tropheryma whipplei TW08/27, complete genome. |
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Accession | NC_004551 |
Length | 925,938 |
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The map label for this gene is 28572930
Identifier: 28572930
GI number: 28572930
Start: 894276
End: 895928
Strand: Direct
Name: 28572930
Synonym: TW789
Alternate gene names: NA
Gene position: 894276-895928 (Clockwise)
Preceding gene: 28572929
Following gene: 28572941
Centisome position: 96.58
GC content: 47.13
Gene sequence:
>1653_bases TTGTCAGATATATCCACACCCATGCCGCACAACAACCGCTATGAGCTTGTAAAGTGCCTGAGGGTTGCCCGGTACTACAA AATGTATCAAGGTTACGATAGGCGACTTAAGAGAAACGTAAATGTGGTCCTGTTTGACACTGAGGTGTCTGATAAAAAGG AATTTTCCTTGGCTCTGGATACTAGGGTGCGTCAGGCTGTAAAACTTGACAGTCCCCATATCGCAACCATCTTTGATGGC GGGGAAGATTATTTTTCCGATTCTATAAGACAATTTATCGCGAGCGAATCGACCCATCACGAAGAAAAATCCCTTGAGGG GTGTTTCATTACCATCAGTAAAAGCATAAGACTCATAGCCGAAGTAATAGACGGGGTTGCACTTGCTTTGGAAGCGGGGC GACAGGGCAATTTACCCCATGGCAGTATAAGTCCACAAAATATTACGTGTCATGATGGGTCTCTGAAAGTTATCAATTTT GCGATTGCAACTTCTGTCAATGATGCAGCTCTTCCGCTGGAAGATGGTAAGGCATTTTTTGCACCCGAGTTACTGGTTGA CAGATCTCTGAATGCCTATAAAGCAGAACCAAGACAGATCACATATAGAAGTGATGTGTACTCTCTGGGCGGACTGTTGT ACTGGTTGCTTACAGGAACAACTTATATTACGGGCGAACAAGTGTGCACCACACGGTATAGGTCAGACACAAATGAGGCA ATAGATTGTGTTTTGCGAAAGGCGCTTGCAATAGAGCCTACGAGTCGATTCTCGAGTGCAGTCGAGATGAGTGATGCCTT ACGTAAGGCGATAGAACCTAAGAAGAAAATTGACCCTCTCAGTATAAAGGACGAGATCCTTGCGCAGGTTAATCTGCCCC ACAAGTCAAGCCATCCGAAGCGTAAGCATAGCAATGCGGTTGCGTTTATCGCTCTTGCAATATGTGCTGTTGCTGCAGTC ATTACCGTAAGTGCAGCGCTAATTACAACAAATCTGCCTGATAACAAACAGGCGCAGGTCGGTGCACCGTTAAGCAACTT GTCAATGCCAAACCTTATAGGAATAGACAAGGAGCAGGCAATAAAGAAATTGAATGATCTGGGGGTAAAATTCAGAATAA ACACAGAGCATTCTGCGACAATGCCAGTCGGCTATGTTACAGGGACATCCCCCAAGTCAGGAGCGGTTGTAGACAGTGAT ACCGAAGTCTCAATTAGCCTATCTGACGGAATGCTTGAGCTGCCAAATTTTGTGGGTGCCAGATTTGAAGCGGCACGTCG AGGACTTGCTGAACTGCGTCTCGAGGTAAAGAAGATCTGCTCTGGGGATACCGTAAACGCGCAAAAGCCCGCAGGCGGAT CGATTGTGCCACAGGAAATTGAGATTACGCTGGAGACCTGTTCGGGGGCAAGTACTTCAAACACCACTGCAAGCACAGCG CCGCGTGCAACATCACGCCCAAGCAGATCTTCCTCGAGTGCAACATCGTCGAGCTCAGTAGAAAAACTGCCTACCGAGAC GAGTAACAGTCAAAATACTCGCACAACCCCTAGCGACAAAGAACAAGACATGAGCCGAGAAAGCTCAAATCCTTCAGGGG CGCCCGAGCGATCAAACAGTGGCACAAACACTTCGCCAGCATCAACAAACTAA
Upstream 100 bases:
>100_bases CCCGGAAAAAATCAAACATTCAATTCCGGGTTTTCTGACGTCCTGAAAATAAGTACGAACGGCTCACATACGCCAAGTAT CGCATCTTCCGGATAGCGCT
Downstream 100 bases:
>100_bases TATCGCGCGCCTTGTAGTTGTTTTTCCTGCTCTGATAAGGTAGAGTCAGGATTTACTCGGGTTATTCGATTGGAGTTGTG TATATGTCAGGGTATGAAAA
Product: serine/threonine-protein kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 550; Mature: 549
Protein sequence:
>550_residues MSDISTPMPHNNRYELVKCLRVARYYKMYQGYDRRLKRNVNVVLFDTEVSDKKEFSLALDTRVRQAVKLDSPHIATIFDG GEDYFSDSIRQFIASESTHHEEKSLEGCFITISKSIRLIAEVIDGVALALEAGRQGNLPHGSISPQNITCHDGSLKVINF AIATSVNDAALPLEDGKAFFAPELLVDRSLNAYKAEPRQITYRSDVYSLGGLLYWLLTGTTYITGEQVCTTRYRSDTNEA IDCVLRKALAIEPTSRFSSAVEMSDALRKAIEPKKKIDPLSIKDEILAQVNLPHKSSHPKRKHSNAVAFIALAICAVAAV ITVSAALITTNLPDNKQAQVGAPLSNLSMPNLIGIDKEQAIKKLNDLGVKFRINTEHSATMPVGYVTGTSPKSGAVVDSD TEVSISLSDGMLELPNFVGARFEAARRGLAELRLEVKKICSGDTVNAQKPAGGSIVPQEIEITLETCSGASTSNTTASTA PRATSRPSRSSSSATSSSSVEKLPTETSNSQNTRTTPSDKEQDMSRESSNPSGAPERSNSGTNTSPASTN
Sequences:
>Translated_550_residues MSDISTPMPHNNRYELVKCLRVARYYKMYQGYDRRLKRNVNVVLFDTEVSDKKEFSLALDTRVRQAVKLDSPHIATIFDG GEDYFSDSIRQFIASESTHHEEKSLEGCFITISKSIRLIAEVIDGVALALEAGRQGNLPHGSISPQNITCHDGSLKVINF AIATSVNDAALPLEDGKAFFAPELLVDRSLNAYKAEPRQITYRSDVYSLGGLLYWLLTGTTYITGEQVCTTRYRSDTNEA IDCVLRKALAIEPTSRFSSAVEMSDALRKAIEPKKKIDPLSIKDEILAQVNLPHKSSHPKRKHSNAVAFIALAICAVAAV ITVSAALITTNLPDNKQAQVGAPLSNLSMPNLIGIDKEQAIKKLNDLGVKFRINTEHSATMPVGYVTGTSPKSGAVVDSD TEVSISLSDGMLELPNFVGARFEAARRGLAELRLEVKKICSGDTVNAQKPAGGSIVPQEIEITLETCSGASTSNTTASTA PRATSRPSRSSSSATSSSSVEKLPTETSNSQNTRTTPSDKEQDMSRESSNPSGAPERSNSGTNTSPASTN >Mature_549_residues SDISTPMPHNNRYELVKCLRVARYYKMYQGYDRRLKRNVNVVLFDTEVSDKKEFSLALDTRVRQAVKLDSPHIATIFDGG EDYFSDSIRQFIASESTHHEEKSLEGCFITISKSIRLIAEVIDGVALALEAGRQGNLPHGSISPQNITCHDGSLKVINFA IATSVNDAALPLEDGKAFFAPELLVDRSLNAYKAEPRQITYRSDVYSLGGLLYWLLTGTTYITGEQVCTTRYRSDTNEAI DCVLRKALAIEPTSRFSSAVEMSDALRKAIEPKKKIDPLSIKDEILAQVNLPHKSSHPKRKHSNAVAFIALAICAVAAVI TVSAALITTNLPDNKQAQVGAPLSNLSMPNLIGIDKEQAIKKLNDLGVKFRINTEHSATMPVGYVTGTSPKSGAVVDSDT EVSISLSDGMLELPNFVGARFEAARRGLAELRLEVKKICSGDTVNAQKPAGGSIVPQEIEITLETCSGASTSNTTASTAP RATSRPSRSSSSATSSSSVEKLPTETSNSQNTRTTPSDKEQDMSRESSNPSGAPERSNSGTNTSPASTN
Specific function: Unknown
COG id: COG0515
COG function: function code RTKL; Serine/threonine protein kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 protein kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR005543 - InterPro: IPR000719 - InterPro: IPR017441 - InterPro: IPR017442 - InterPro: IPR008271 [H]
Pfam domain/function: PF03793 PASTA; PF00069 Pkinase [H]
EC number: =2.7.11.1 [H]
Molecular weight: Translated: 59507; Mature: 59375
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: PS50011 PROTEIN_KINASE_DOM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDISTPMPHNNRYELVKCLRVARYYKMYQGYDRRLKRNVNVVLFDTEVSDKKEFSLALD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH TRVRQAVKLDSPHIATIFDGGEDYFSDSIRQFIASESTHHEEKSLEGCFITISKSIRLIA HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEEHHHHHHHH EVIDGVALALEAGRQGNLPHGSISPQNITCHDGSLKVINFAIATSVNDAALPLEDGKAFF HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEECCCCCCCCCCCCCEEE APELLVDRSLNAYKAEPRQITYRSDVYSLGGLLYWLLTGTTYITGEQVCTTRYRSDTNEA CCHHHHHCCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHCCCCHHH IDCVLRKALAIEPTSRFSSAVEMSDALRKAIEPKKKIDPLSIKDEILAQVNLPHKSSHPK HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCCCCCCCCC RKHSNAVAFIALAICAVAAVITVSAALITTNLPDNKQAQVGAPLSNLSMPNLIGIDKEQA HHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHCCCCCEECCCHHHH IKKLNDLGVKFRINTEHSATMPVGYVTGTSPKSGAVVDSDTEVSISLSDGMLELPNFVGA HHHHHHCCEEEEECCCCCCCCCEEEEECCCCCCCCEECCCCEEEEEECCCCHHHHHHHHH RFEAARRGLAELRLEVKKICSGDTVNAQKPAGGSIVPQEIEITLETCSGASTSNTTASTA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC PRATSRPSRSSSSATSSSSVEKLPTETSNSQNTRTTPSDKEQDMSRESSNPSGAPERSNS CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC GTNTSPASTN CCCCCCCCCC >Mature Secondary Structure SDISTPMPHNNRYELVKCLRVARYYKMYQGYDRRLKRNVNVVLFDTEVSDKKEFSLALD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH TRVRQAVKLDSPHIATIFDGGEDYFSDSIRQFIASESTHHEEKSLEGCFITISKSIRLIA HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEEHHHHHHHH EVIDGVALALEAGRQGNLPHGSISPQNITCHDGSLKVINFAIATSVNDAALPLEDGKAFF HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEECCCCCCCCCCCCCEEE APELLVDRSLNAYKAEPRQITYRSDVYSLGGLLYWLLTGTTYITGEQVCTTRYRSDTNEA CCHHHHHCCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHCCCCHHH IDCVLRKALAIEPTSRFSSAVEMSDALRKAIEPKKKIDPLSIKDEILAQVNLPHKSSHPK HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCCCCCCCCC RKHSNAVAFIALAICAVAAVITVSAALITTNLPDNKQAQVGAPLSNLSMPNLIGIDKEQA HHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHCCCCCEECCCHHHH IKKLNDLGVKFRINTEHSATMPVGYVTGTSPKSGAVVDSDTEVSISLSDGMLELPNFVGA HHHHHHCCEEEEECCCCCCCCCEEEEECCCCCCCCEECCCCEEEEEECCCCHHHHHHHHH RFEAARRGLAELRLEVKKICSGDTVNAQKPAGGSIVPQEIEITLETCSGASTSNTTASTA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC PRATSRPSRSSSSATSSSSVEKLPTETSNSQNTRTTPSDKEQDMSRESSNPSGAPERSNS CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC GTNTSPASTN CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11792842 [H]