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The map label for this gene is ccsA [H]

Identifier: 28572912

GI number: 28572912

Start: 868063

End: 869034

Strand: Direct

Name: ccsA [H]

Synonym: TW771

Alternate gene names: 28572912

Gene position: 868063-869034 (Clockwise)

Preceding gene: 28572911

Following gene: 28572916

Centisome position: 93.75

GC content: 44.24

Gene sequence:

>972_bases
ATGGATTTTGATCGTTATTCCCTGTTTTTTTTGGCCTCTGCTCTCCCTATTTACACCCTTGGCTTTATTGCCTACACTGT
CGCGTTTGTCCAGTCGATAGCTGGGGTTTCGGATAATACAGCTGGGGTTTCATCTCATTCCGGTATTGGTAATTCGCCTG
ATACACGTACGCATAACACCGGTGTGGCTTATGGTGACGCAAATAAGGTAGGCACTCTTGTTAAAGTTGCAAATCTATTT
GGCAAGACTCATAAACTGTTTAGAGTCGCAACTGTTCTGAGTTTTATCGGGGTCGTCTTGCACGGCACATCCGTCATTCT
AAGAGGTATTGCGGCCGGTAGAGTGCCTTGGGCGAATATGTATGAATTTGCCCTCACGAGCACATTTGTTTGCGTTCTTG
TCTTTCTTTCAGTTGCAAGAAAGGTGGATCTCAATTTCCTTGCTCCATTTTTTTTCGGATTAATCGTTATTTTTCTCGGT
TCCGGATTGACTCTAGTGTATGTACCGATCTCACCGCTTCCACCAGCTTTACACTCATATTGGCTGATAATACATATACT
TGTCGCCATACTTGCAACAGGGTTTTTTATGCTCGGTGCACTTCTGAGTGGGCTGCAACTGTCCAGAAATGTTTTCTTCG
CACAGTCTAGGCTCATACCGAATGTGGATTTTCTGGAAAATATAGCATATAAGCTAAACGTAATTGGGTTTGTATTCTGG
AGTTTTACACTTGTTGCAGGTGCGATATGGGCAGAAAAGGCCTGGGGAAGATTCTGGGGATGGGACACAAAAGAAATATG
GACCTTCATCATCTGGATTCTTTACGCGGCCTACATACACGCCAGGGCAACGGCAGGATGGAGGGGAACTCGTTCCTCTG
TGCTCTCCTTGATAGGATTTACAACGATTATATTCAACTTTACAATCGTGAATGTGTTCTTCTCTGGATTACACAGCTAC
TCTGGCCTATGA

Upstream 100 bases:

>100_bases
AATTCCAGATAAATTTGTGAAGGCATTTATGGGCAAATTTCTCGCTCAGCTAGAATCAGCAAATGTTAGACTTAGGGGGT
CGCATACTGGATAGGTTTTT

Downstream 100 bases:

>100_bases
AGCAGCCTTGAGACTCTCCTTGAACTTACGTATCATATCTTCCAGAGACTCTGTTGCATAGGAGTTAACAGGAGCTGGAT
GGGTAACCCAGGTAGGTGTC

Product: cytochrome biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MDFDRYSLFFLASALPIYTLGFIAYTVAFVQSIAGVSDNTAGVSSHSGIGNSPDTRTHNTGVAYGDANKVGTLVKVANLF
GKTHKLFRVATVLSFIGVVLHGTSVILRGIAAGRVPWANMYEFALTSTFVCVLVFLSVARKVDLNFLAPFFFGLIVIFLG
SGLTLVYVPISPLPPALHSYWLIIHILVAILATGFFMLGALLSGLQLSRNVFFAQSRLIPNVDFLENIAYKLNVIGFVFW
SFTLVAGAIWAEKAWGRFWGWDTKEIWTFIIWILYAAYIHARATAGWRGTRSSVLSLIGFTTIIFNFTIVNVFFSGLHSY
SGL

Sequences:

>Translated_323_residues
MDFDRYSLFFLASALPIYTLGFIAYTVAFVQSIAGVSDNTAGVSSHSGIGNSPDTRTHNTGVAYGDANKVGTLVKVANLF
GKTHKLFRVATVLSFIGVVLHGTSVILRGIAAGRVPWANMYEFALTSTFVCVLVFLSVARKVDLNFLAPFFFGLIVIFLG
SGLTLVYVPISPLPPALHSYWLIIHILVAILATGFFMLGALLSGLQLSRNVFFAQSRLIPNVDFLENIAYKLNVIGFVFW
SFTLVAGAIWAEKAWGRFWGWDTKEIWTFIIWILYAAYIHARATAGWRGTRSSVLSLIGFTTIIFNFTIVNVFFSGLHSY
SGL
>Mature_323_residues
MDFDRYSLFFLASALPIYTLGFIAYTVAFVQSIAGVSDNTAGVSSHSGIGNSPDTRTHNTGVAYGDANKVGTLVKVANLF
GKTHKLFRVATVLSFIGVVLHGTSVILRGIAAGRVPWANMYEFALTSTFVCVLVFLSVARKVDLNFLAPFFFGLIVIFLG
SGLTLVYVPISPLPPALHSYWLIIHILVAILATGFFMLGALLSGLQLSRNVFFAQSRLIPNVDFLENIAYKLNVIGFVFW
SFTLVAGAIWAEKAWGRFWGWDTKEIWTFIIWILYAAYIHARATAGWRGTRSSVLSLIGFTTIIFNFTIVNVFFSGLHSY
SGL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 35541; Mature: 35541

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDRYSLFFLASALPIYTLGFIAYTVAFVQSIAGVSDNTAGVSSHSGIGNSPDTRTHNT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
GVAYGDANKVGTLVKVANLFGKTHKLFRVATVLSFIGVVLHGTSVILRGIAAGRVPWANM
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
YEFALTSTFVCVLVFLSVARKVDLNFLAPFFFGLIVIFLGSGLTLVYVPISPLPPALHSY
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
WLIIHILVAILATGFFMLGALLSGLQLSRNVFFAQSRLIPNVDFLENIAYKLNVIGFVFW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SFTLVAGAIWAEKAWGRFWGWDTKEIWTFIIWILYAAYIHARATAGWRGTRSSVLSLIGF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TTIIFNFTIVNVFFSGLHSYSGL
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDFDRYSLFFLASALPIYTLGFIAYTVAFVQSIAGVSDNTAGVSSHSGIGNSPDTRTHNT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
GVAYGDANKVGTLVKVANLFGKTHKLFRVATVLSFIGVVLHGTSVILRGIAAGRVPWANM
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
YEFALTSTFVCVLVFLSVARKVDLNFLAPFFFGLIVIFLGSGLTLVYVPISPLPPALHSY
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
WLIIHILVAILATGFFMLGALLSGLQLSRNVFFAQSRLIPNVDFLENIAYKLNVIGFVFW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
SFTLVAGAIWAEKAWGRFWGWDTKEIWTFIIWILYAAYIHARATAGWRGTRSSVLSLIGF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TTIIFNFTIVNVFFSGLHSYSGL
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA