Definition Lactobacillus plantarum WCFS1, complete genome.
Accession NC_004567
Length 3,308,274

Click here to switch to the map view.

The map label for this gene is 28378958

Identifier: 28378958

GI number: 28378958

Start: 2155706

End: 2156068

Strand: Direct

Name: 28378958

Synonym: lp_2391

Alternate gene names: NA

Gene position: 2155706-2156068 (Clockwise)

Preceding gene: 28378953

Following gene: 28378963

Centisome position: 65.16

GC content: 39.39

Gene sequence:

>363_bases
ATGAGTGTAAATTTAGCAAAGGACTGGTTTGTCGTGGCTAGTAATTCAGATTCAATTTATAACGTCATGTTCTATATCAC
CCATCACCCGACTGAAATTCAGTTTACCCAACCGGAATACACGAATGTCGTTCGGATGGGTGTTCCCGATCATATTAAGG
TCGCTAACCCCGAAATTTATTTTCCTGACAACAAGCTATTAGTCAACCGATTTCAGGATGACTTTGTCGCTAAAAACGGC
AACTTACTTGATTTCTTCTTCGATTACACAGAGAAAAAAGTCCCTAACTACCATGAAGTGTGGGTTTCTTCGGCCCATTT
ACCAGCCAAACACTTATACTTCTTAGAGTTATCATTTGAGTAA

Upstream 100 bases:

>100_bases
AATTAATTAATTTGAATTTAATTAAAAGATTAATGGTTAATTAGAAGTTTGTCAAGGGGCCCGTCAAACATTTCCAACGC
TTTAAGATTTTTTTGGTATA

Downstream 100 bases:

>100_bases
TTTAACGCACGTAACCTTTACGGTCTATTTGGAATCAAATTTAAAATGGATCAATCAAAAAATCACCACCTGGATTATGT
TCATCCAGGTGGTGATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSVNLAKDWFVVASNSDSIYNVMFYITHHPTEIQFTQPEYTNVVRMGVPDHIKVANPEIYFPDNKLLVNRFQDDFVAKNG
NLLDFFFDYTEKKVPNYHEVWVSSAHLPAKHLYFLELSFE

Sequences:

>Translated_120_residues
MSVNLAKDWFVVASNSDSIYNVMFYITHHPTEIQFTQPEYTNVVRMGVPDHIKVANPEIYFPDNKLLVNRFQDDFVAKNG
NLLDFFFDYTEKKVPNYHEVWVSSAHLPAKHLYFLELSFE
>Mature_119_residues
SVNLAKDWFVVASNSDSIYNVMFYITHHPTEIQFTQPEYTNVVRMGVPDHIKVANPEIYFPDNKLLVNRFQDDFVAKNGN
LLDFFFDYTEKKVPNYHEVWVSSAHLPAKHLYFLELSFE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14136; Mature: 14005

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNLAKDWFVVASNSDSIYNVMFYITHHPTEIQFTQPEYTNVVRMGVPDHIKVANPEIY
CCCCCCCCEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCCEEEECCCCCEEECCCEEE
FPDNKLLVNRFQDDFVAKNGNLLDFFFDYTEKKVPNYHEVWVSSAHLPAKHLYFLELSFE
ECCCEEEEEECCCCEECCCCCEEEEEECCHHHCCCCHHHEEEECCCCCCCEEEEEEEECC
>Mature Secondary Structure 
SVNLAKDWFVVASNSDSIYNVMFYITHHPTEIQFTQPEYTNVVRMGVPDHIKVANPEIY
CCCCCCCEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCCEEEECCCCCEEECCCEEE
FPDNKLLVNRFQDDFVAKNGNLLDFFFDYTEKKVPNYHEVWVSSAHLPAKHLYFLELSFE
ECCCEEEEEECCCCEECCCCCEEEEEECCHHHCCCCHHHEEEECCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA