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The map label for this gene is 28378560

Identifier: 28378560

GI number: 28378560

Start: 1728768

End: 1729274

Strand: Direct

Name: 28378560

Synonym: lp_1911

Alternate gene names: NA

Gene position: 1728768-1729274 (Clockwise)

Preceding gene: 28378557

Following gene: 28378564

Centisome position: 52.26

GC content: 47.53

Gene sequence:

>507_bases
GTGACAACGAATATTAAGGCGGAACTAGTCGCCGGAAAATTGGCCGAGTACGAACAATTAAGCAAAATTTATGATGACAT
TGTCAAGCAGGCCCGTCCAAGAATAACTGTTGAAGGTCAGGGCAAGATTCTACTAGCACTAGCCGATGAGGACCACCTCT
CACAAAAACAGTTGGCAAGTCGCCTTGGCATGTCGCCGCAATCAACGAGCGAGTTCGTCTATAAACTTGTCAATCGTCAG
CTGGTCACTTTATCCAAGTCCACCAAAGATCGCCGCGTCAACCTTGTGAACTTAACGGCTGCTGGTCGCAAAGAGATTGC
ATCCGCAGCCCAGGAGGTCCCCCCATTTGTCAACACGCTTTCTGACGACGAGCTCGATCAACTGGCACCCTTGTTAACCA
AAATTACCACCGCGATGTATGCGGATATTGACGCTGCCAACCCGACTTTGGGCGTTAAGTTTCACAAATTATTTGCTAGT
CGGTACTTGAAACAGTTTAAAAAGTAA

Upstream 100 bases:

>100_bases
ACTAATTATTGACCATCAATCTAAAAATCAACTAACCTTAACGTACCGCATACCAAAGAATGTTGTATACTTAAGAAAAG
AACGAATGGAATGATCAATC

Downstream 100 bases:

>100_bases
ATCATATGCCACCTGCCCGTCATTTTTAGATGACCTCTTGCTCCGAATTAACCCTGAATCAGTATTTGGCTCTAAACAAA
CTTAAAGGCGGACCAATTCA

Product: transcription regulator (putative)

Products: NA

Alternate protein names: MarR Family Transcriptional Regulator; Transcription Regulator

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTTNIKAELVAGKLAEYEQLSKIYDDIVKQARPRITVEGQGKILLALADEDHLSQKQLASRLGMSPQSTSEFVYKLVNRQ
LVTLSKSTKDRRVNLVNLTAAGRKEIASAAQEVPPFVNTLSDDELDQLAPLLTKITTAMYADIDAANPTLGVKFHKLFAS
RYLKQFKK

Sequences:

>Translated_168_residues
MTTNIKAELVAGKLAEYEQLSKIYDDIVKQARPRITVEGQGKILLALADEDHLSQKQLASRLGMSPQSTSEFVYKLVNRQ
LVTLSKSTKDRRVNLVNLTAAGRKEIASAAQEVPPFVNTLSDDELDQLAPLLTKITTAMYADIDAANPTLGVKFHKLFAS
RYLKQFKK
>Mature_167_residues
TTNIKAELVAGKLAEYEQLSKIYDDIVKQARPRITVEGQGKILLALADEDHLSQKQLASRLGMSPQSTSEFVYKLVNRQL
VTLSKSTKDRRVNLVNLTAAGRKEIASAAQEVPPFVNTLSDDELDQLAPLLTKITTAMYADIDAANPTLGVKFHKLFASR
YLKQFKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18678; Mature: 18547

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNIKAELVAGKLAEYEQLSKIYDDIVKQARPRITVEGQGKILLALADEDHLSQKQLAS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCHHCCHHHHHH
RLGMSPQSTSEFVYKLVNRQLVTLSKSTKDRRVNLVNLTAAGRKEIASAAQEVPPFVNTL
HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHC
SDDELDQLAPLLTKITTAMYADIDAANPTLGVKFHKLFASRYLKQFKK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTNIKAELVAGKLAEYEQLSKIYDDIVKQARPRITVEGQGKILLALADEDHLSQKQLAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCHHCCHHHHHH
RLGMSPQSTSEFVYKLVNRQLVTLSKSTKDRRVNLVNLTAAGRKEIASAAQEVPPFVNTL
HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHC
SDDELDQLAPLLTKITTAMYADIDAANPTLGVKFHKLFASRYLKQFKK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA