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The map label for this gene is 28378468

Identifier: 28378468

GI number: 28378468

Start: 1627418

End: 1628287

Strand: Direct

Name: 28378468

Synonym: lp_1796

Alternate gene names: NA

Gene position: 1627418-1628287 (Clockwise)

Preceding gene: 28378467

Following gene: 28378469

Centisome position: 49.19

GC content: 45.52

Gene sequence:

>870_bases
ATGAAGATTGCTGTTGTTACTGACAGCACGAGCTATTTGACACCGCAAGAGGTCGCGGACAACGATATTCATGTCGTGCC
GATTCCGGTTATTATAGATGGAAAAGTGTATCAAGAAGGTGTCGACATTAAAACGGCCGACTTTTACGCAAATATGAAAT
CATTTAAGTCGTTCCCAAGTACGTCCCAACCACCCGTGGGGGAAATGGTGGCATTCTATAACCGCTTGGGTGAACAAGGT
TATGATGCAGTCATCAGTATTCATCTTGCTAGCACGATTTCCGGTTTTTATAATAGCTTGATGAACATGCGAGATATGGT
CGATAATATCAAACTTTATCCGTATGACTCCCAGATTACGGTCCGTCTGATGGGCTATTTGGCAATTGAAGCCGCGCGGA
TGGCTAAAGCTGGTCACAGTGTTGAAGAAATCCTGGCACGCCTAGATGATCTGCGGGCCTCGATGGGCGAATACTTTATC
GTGGATGATTTGCAAAATCTGGTCCGGGGTGGTCGGTTATCGAATGCGTCAGCCTTCATTGGAAGCGTGTTACGGATCAA
GCCACTGTTGACTTTTGATGATCAGAGCCATGAAATCGTCGCCTTTGAGAAAGTTCGTTCAACTAAGAAAGCTTTAGCGC
GAGTTGAGCACCTCTTTGCTGAAGCACAGTCAAAAGTCGACTATCCGCTGCGAGCAATTATCGTTCAGGGGAATAATTTG
GCTGCCGCTGAAGATTGGAAACAAAAGTTACAACAAATTTATCCAGACATGCCGATCGATATCACGTACTTTGGTCCAGT
GATTGGGGCCCATTTAGGTGACAAGTCATTAGCGTTAGCCTGGTTGAAGGACATTGATAAGGCCTACTAA

Upstream 100 bases:

>100_bases
AATTCTCGAGCCATGACTTTCCAAACGGTCGAAGGTAGAGTATAACTTAGTTTTATGCTATGATATTTGTTATTATTTAA
ATGAGAAGTAGGTGTAAGTC

Downstream 100 bases:

>100_bases
AATGAAAATTATTTTTTCAGCATCACCAGCCAATCGGGCAGCGGCCTACGCGTTACGTCAGGCTGTATTTGTTGAAGAGC
GTGGAATCAGTGCTGACGTT

Product: DegV family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKIAVVTDSTSYLTPQEVADNDIHVVPIPVIIDGKVYQEGVDIKTADFYANMKSFKSFPSTSQPPVGEMVAFYNRLGEQG
YDAVISIHLASTISGFYNSLMNMRDMVDNIKLYPYDSQITVRLMGYLAIEAARMAKAGHSVEEILARLDDLRASMGEYFI
VDDLQNLVRGGRLSNASAFIGSVLRIKPLLTFDDQSHEIVAFEKVRSTKKALARVEHLFAEAQSKVDYPLRAIIVQGNNL
AAAEDWKQKLQQIYPDMPIDITYFGPVIGAHLGDKSLALAWLKDIDKAY

Sequences:

>Translated_289_residues
MKIAVVTDSTSYLTPQEVADNDIHVVPIPVIIDGKVYQEGVDIKTADFYANMKSFKSFPSTSQPPVGEMVAFYNRLGEQG
YDAVISIHLASTISGFYNSLMNMRDMVDNIKLYPYDSQITVRLMGYLAIEAARMAKAGHSVEEILARLDDLRASMGEYFI
VDDLQNLVRGGRLSNASAFIGSVLRIKPLLTFDDQSHEIVAFEKVRSTKKALARVEHLFAEAQSKVDYPLRAIIVQGNNL
AAAEDWKQKLQQIYPDMPIDITYFGPVIGAHLGDKSLALAWLKDIDKAY
>Mature_289_residues
MKIAVVTDSTSYLTPQEVADNDIHVVPIPVIIDGKVYQEGVDIKTADFYANMKSFKSFPSTSQPPVGEMVAFYNRLGEQG
YDAVISIHLASTISGFYNSLMNMRDMVDNIKLYPYDSQITVRLMGYLAIEAARMAKAGHSVEEILARLDDLRASMGEYFI
VDDLQNLVRGGRLSNASAFIGSVLRIKPLLTFDDQSHEIVAFEKVRSTKKALARVEHLFAEAQSKVDYPLRAIIVQGNNL
AAAEDWKQKLQQIYPDMPIDITYFGPVIGAHLGDKSLALAWLKDIDKAY

Specific function: Unknown

COG id: COG1307

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DegV domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003797 [H]

Pfam domain/function: PF02645 DegV [H]

EC number: NA

Molecular weight: Translated: 32203; Mature: 32203

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAVVTDSTSYLTPQEVADNDIHVVPIPVIIDGKVYQEGVDIKTADFYANMKSFKSFPS
CEEEEEECCCCCCCHHHHCCCCEEEEEEEEEECCHHHHCCCCEEHHHHHHHHHHHHCCCC
TSQPPVGEMVAFYNRLGEQGYDAVISIHLASTISGFYNSLMNMRDMVDNIKLYPYDSQIT
CCCCCHHHHHHHHHHHCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHH
VRLMGYLAIEAARMAKAGHSVEEILARLDDLRASMGEYFIVDDLQNLVRGGRLSNASAFI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCHHHHH
GSVLRIKPLLTFDDQSHEIVAFEKVRSTKKALARVEHLFAEAQSKVDYPLRAIIVQGNNL
HHHHHHEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
AAAEDWKQKLQQIYPDMPIDITYFGPVIGAHLGDKSLALAWLKDIDKAY
CHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIAVVTDSTSYLTPQEVADNDIHVVPIPVIIDGKVYQEGVDIKTADFYANMKSFKSFPS
CEEEEEECCCCCCCHHHHCCCCEEEEEEEEEECCHHHHCCCCEEHHHHHHHHHHHHCCCC
TSQPPVGEMVAFYNRLGEQGYDAVISIHLASTISGFYNSLMNMRDMVDNIKLYPYDSQIT
CCCCCHHHHHHHHHHHCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHH
VRLMGYLAIEAARMAKAGHSVEEILARLDDLRASMGEYFIVDDLQNLVRGGRLSNASAFI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCHHHHH
GSVLRIKPLLTFDDQSHEIVAFEKVRSTKKALARVEHLFAEAQSKVDYPLRAIIVQGNNL
HHHHHHEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
AAAEDWKQKLQQIYPDMPIDITYFGPVIGAHLGDKSLALAWLKDIDKAY
CHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]