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The map label for this gene is rbsA [H]

Identifier: 28378447

GI number: 28378447

Start: 1605342

End: 1606019

Strand: Direct

Name: rbsA [H]

Synonym: lp_1771

Alternate gene names: 28378447

Gene position: 1605342-1606019 (Clockwise)

Preceding gene: 28378446

Following gene: 28378449

Centisome position: 48.53

GC content: 46.61

Gene sequence:

>678_bases
ATGATGCGTGTTGAGCACTTAGCATATCAGTTTTCAAGAAATGGGCAACCGTTCTTCAAGGACGTGAGTTTTCAATTAAA
AAGTCCCGGTGTCAATTTTTTGATTGGTCAAAATGGCGCTGGAAAAACGACGCTGGCTGATATCATCACTGGTTTGCGGC
CAGCACAAGGTGAATTAGACCTACCTAAAGCAGCCATTTATTTGAACCAACAACTCCCGTTACTGTCTTCAATTCGTGTG
CGGGACGTTGCCCAACTGGTTTTGGGCATCGAGCACGGACGACTACGATTGACAACTGAACAGCTCCAACAACTTATTGA
TACCCAAGCTTATCAATTCTTGGCCCCGTTGTGGGATCAGCATTATGGTCAGCTTTCTGGGGGCCAACGCAAATTAGTTC
AGTTATTGCTGTTCTTACAAGTTGATCGCGAATTGATTGTTTTGGATGAACCAACAGCAGCGGTCGATCGGGAAAACGTG
CAGTTGTTGTTTCAGGTCATGCAAGCCCATCCTGAGCGAACCTACTTGATGATTACACATGACGTTCGCGACCTTCATGC
TTTTACAGATTACCAAGTGCTGTGGCTCAATGATCGGCAGGTGACGACACTGTCCAAGCGAACGTTTGAAGCTGCGAGCG
CGCAAGCTGACTTTGTTGCGCTCTTCAAAACGCAGTAA

Upstream 100 bases:

>100_bases
GCCACTTTATGACGACTTATCTTCTGAGTCTGATTGTATTATTGGTTATCGGCGGATTTAGCTATCGGCACATTAAGATT
CTGCCAACGGAGGGCTTATA

Downstream 100 bases:

>100_bases
TATAACAGTAATGGCTCTTGCGCCGCAATGGCGACACTTATTTTGAGTCCTTTGGCGCTCAAGTTGGCCTCGCTGGCAAG
TCTCATAAAATGACACTAAA

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MMRVEHLAYQFSRNGQPFFKDVSFQLKSPGVNFLIGQNGAGKTTLADIITGLRPAQGELDLPKAAIYLNQQLPLLSSIRV
RDVAQLVLGIEHGRLRLTTEQLQQLIDTQAYQFLAPLWDQHYGQLSGGQRKLVQLLLFLQVDRELIVLDEPTAAVDRENV
QLLFQVMQAHPERTYLMITHDVRDLHAFTDYQVLWLNDRQVTTLSKRTFEAASAQADFVALFKTQ

Sequences:

>Translated_225_residues
MMRVEHLAYQFSRNGQPFFKDVSFQLKSPGVNFLIGQNGAGKTTLADIITGLRPAQGELDLPKAAIYLNQQLPLLSSIRV
RDVAQLVLGIEHGRLRLTTEQLQQLIDTQAYQFLAPLWDQHYGQLSGGQRKLVQLLLFLQVDRELIVLDEPTAAVDRENV
QLLFQVMQAHPERTYLMITHDVRDLHAFTDYQVLWLNDRQVTTLSKRTFEAASAQADFVALFKTQ
>Mature_225_residues
MMRVEHLAYQFSRNGQPFFKDVSFQLKSPGVNFLIGQNGAGKTTLADIITGLRPAQGELDLPKAAIYLNQQLPLLSSIRV
RDVAQLVLGIEHGRLRLTTEQLQQLIDTQAYQFLAPLWDQHYGQLSGGQRKLVQLLLFLQVDRELIVLDEPTAAVDRENV
QLLFQVMQAHPERTYLMITHDVRDLHAFTDYQVLWLNDRQVTTLSKRTFEAASAQADFVALFKTQ

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: COG4604

COG function: function code P; ABC-type enterochelin transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Escherichia coli, GI1786345, Length=202, Percent_Identity=27.7227722772277, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 25647; Mature: 25647

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRVEHLAYQFSRNGQPFFKDVSFQLKSPGVNFLIGQNGAGKTTLADIITGLRPAQGELD
CCCHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCC
LPKAAIYLNQQLPLLSSIRVRDVAQLVLGIEHGRLRLTTEQLQQLIDTQAYQFLAPLWDQ
CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH
HYGQLSGGQRKLVQLLLFLQVDRELIVLDEPTAAVDRENVQLLFQVMQAHPERTYLMITH
HCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHCCHHHHHHHHHHHHCCCCCEEEEEEC
DVRDLHAFTDYQVLWLNDRQVTTLSKRTFEAASAQADFVALFKTQ
CHHHHHHHCCEEEEEECCCEEEHHHHHHHHHHCCCCCEEEEEECC
>Mature Secondary Structure
MMRVEHLAYQFSRNGQPFFKDVSFQLKSPGVNFLIGQNGAGKTTLADIITGLRPAQGELD
CCCHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCC
LPKAAIYLNQQLPLLSSIRVRDVAQLVLGIEHGRLRLTTEQLQQLIDTQAYQFLAPLWDQ
CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH
HYGQLSGGQRKLVQLLLFLQVDRELIVLDEPTAAVDRENVQLLFQVMQAHPERTYLMITH
HCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHCCHHHHHHHHHHHHCCCCCEEEEEEC
DVRDLHAFTDYQVLWLNDRQVTTLSKRTFEAASAQADFVALFKTQ
CHHHHHHHCCEEEEEECCCEEEHHHHHHHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]