Definition Lactobacillus plantarum WCFS1, complete genome.
Accession NC_004567
Length 3,308,274

Click here to switch to the map view.

The map label for this gene is yfbR [C]

Identifier: 28377627

GI number: 28377627

Start: 704378

End: 705025

Strand: Direct

Name: yfbR [C]

Synonym: lp_0771

Alternate gene names: 28377627

Gene position: 704378-705025 (Clockwise)

Preceding gene: 28377626

Following gene: 28377628

Centisome position: 21.29

GC content: 42.59

Gene sequence:

>648_bases
ATGGGAATGCATCAATATTTTCAGAGCTTAAGTAATTTAGAAACGATTCAACGGGCCCCGGGTTTTTTTAAGTATCAAAA
TCATTCAGTTGCGGCGCATTCATTTAAGGTTGCTGAAGTCGCCCAATTTTTAGGTGATGTGGAAGAAAATGCCGGACAAA
TTGTTGATTGGCGAGCCCTCTATGAGAAGGCGCTGAATCACGACTATAATGAGCGGTTTATCGGGGATATTAAGACGCCT
GTCAAGTACGCAACGCCGACGCTACGGACGATGCTGGCGGATGTTGAGCATAAATTATCACAAAATTTTGTGCAAAATGA
GATTCCAGCTGAGTTTCAGGCAGCTTATTCACGGCGTCTATCAGAAGGCAAGGATGAAACGCTAGAAGGCCAGATATTGT
CGGTAGCCGATAAAATTGACCTATTGTATGAGTCGTTTGGTGAAATTCAAAAGGGTAATCCGGAACCAGTTTTTAGGGAT
ATTTATCAAGAAAGTTTAAAAACAATTGTCGCGTTTAAAAAGATGACTAGTGTTCAATATTTCTTAAAAGCAGTGCTACC
AGAGATGTTAGCGGAACCGTTCACGCATCAGGATCAATTACAGGCGCTGACGACCCAGATTTTAACGGCCGGGCCGCAAT
CCGATTAA

Upstream 100 bases:

>100_bases
CATAACAGTTAAGCTAATCAGCGAAAGCGCTCCGGGTTTGCGTCCCCGGGGCGCTTTTGTTACACTTAGGCCAAATTAGA
TTGAAGGATGGTGGGCTGCA

Downstream 100 bases:

>100_bases
TGGCGAAAGTATGTTCGATGTGCTAAAATTAAATGCGATTTGAATGTGATAGGGAAGCGCGGGCTTGCCTATTTTTTATG
GTGCGACAGTAAGATTTAGT

Product: HD superfamily hydrolase

Products: NA

Alternate protein names: Metal Dependent Phosphohydrolase; HD Domain-Containing Protein; Hydrolase; Hydrolase Of HD Superfamily-Like Protein; Metal-Dependent Phosphohydrolase Of HD Superfamily; Phosphohydrolase; HD Domain Protein; Nucleotidase YfbR HD Superfamily; Hydrolase Of HD Superfamily; Hydrolase Of HAD Superfamily

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MGMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRALYEKALNHDYNERFIGDIKTP
VKYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRLSEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRD
IYQESLKTIVAFKKMTSVQYFLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD

Sequences:

>Translated_215_residues
MGMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRALYEKALNHDYNERFIGDIKTP
VKYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRLSEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRD
IYQESLKTIVAFKKMTSVQYFLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD
>Mature_214_residues
GMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRALYEKALNHDYNERFIGDIKTPV
KYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRLSEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRDI
YQESLKTIVAFKKMTSVQYFLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD

Specific function: Unknown

COG id: COG1896

COG function: function code R; Predicted hydrolases of HD superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24484; Mature: 24353

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRAL
CCHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YEKALNHDYNERFIGDIKTPVKYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRL
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRDIYQESLKTIVAFKKMTSVQY
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRAL
CHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YEKALNHDYNERFIGDIKTPVKYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRL
HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRDIYQESLKTIVAFKKMTSVQY
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA