| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is yfbR [C]
Identifier: 28377627
GI number: 28377627
Start: 704378
End: 705025
Strand: Direct
Name: yfbR [C]
Synonym: lp_0771
Alternate gene names: 28377627
Gene position: 704378-705025 (Clockwise)
Preceding gene: 28377626
Following gene: 28377628
Centisome position: 21.29
GC content: 42.59
Gene sequence:
>648_bases ATGGGAATGCATCAATATTTTCAGAGCTTAAGTAATTTAGAAACGATTCAACGGGCCCCGGGTTTTTTTAAGTATCAAAA TCATTCAGTTGCGGCGCATTCATTTAAGGTTGCTGAAGTCGCCCAATTTTTAGGTGATGTGGAAGAAAATGCCGGACAAA TTGTTGATTGGCGAGCCCTCTATGAGAAGGCGCTGAATCACGACTATAATGAGCGGTTTATCGGGGATATTAAGACGCCT GTCAAGTACGCAACGCCGACGCTACGGACGATGCTGGCGGATGTTGAGCATAAATTATCACAAAATTTTGTGCAAAATGA GATTCCAGCTGAGTTTCAGGCAGCTTATTCACGGCGTCTATCAGAAGGCAAGGATGAAACGCTAGAAGGCCAGATATTGT CGGTAGCCGATAAAATTGACCTATTGTATGAGTCGTTTGGTGAAATTCAAAAGGGTAATCCGGAACCAGTTTTTAGGGAT ATTTATCAAGAAAGTTTAAAAACAATTGTCGCGTTTAAAAAGATGACTAGTGTTCAATATTTCTTAAAAGCAGTGCTACC AGAGATGTTAGCGGAACCGTTCACGCATCAGGATCAATTACAGGCGCTGACGACCCAGATTTTAACGGCCGGGCCGCAAT CCGATTAA
Upstream 100 bases:
>100_bases CATAACAGTTAAGCTAATCAGCGAAAGCGCTCCGGGTTTGCGTCCCCGGGGCGCTTTTGTTACACTTAGGCCAAATTAGA TTGAAGGATGGTGGGCTGCA
Downstream 100 bases:
>100_bases TGGCGAAAGTATGTTCGATGTGCTAAAATTAAATGCGATTTGAATGTGATAGGGAAGCGCGGGCTTGCCTATTTTTTATG GTGCGACAGTAAGATTTAGT
Product: HD superfamily hydrolase
Products: NA
Alternate protein names: Metal Dependent Phosphohydrolase; HD Domain-Containing Protein; Hydrolase; Hydrolase Of HD Superfamily-Like Protein; Metal-Dependent Phosphohydrolase Of HD Superfamily; Phosphohydrolase; HD Domain Protein; Nucleotidase YfbR HD Superfamily; Hydrolase Of HD Superfamily; Hydrolase Of HAD Superfamily
Number of amino acids: Translated: 215; Mature: 214
Protein sequence:
>215_residues MGMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRALYEKALNHDYNERFIGDIKTP VKYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRLSEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRD IYQESLKTIVAFKKMTSVQYFLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD
Sequences:
>Translated_215_residues MGMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRALYEKALNHDYNERFIGDIKTP VKYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRLSEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRD IYQESLKTIVAFKKMTSVQYFLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD >Mature_214_residues GMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRALYEKALNHDYNERFIGDIKTPV KYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRLSEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRDI YQESLKTIVAFKKMTSVQYFLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD
Specific function: Unknown
COG id: COG1896
COG function: function code R; Predicted hydrolases of HD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24484; Mature: 24353
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRAL CCHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH YEKALNHDYNERFIGDIKTPVKYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRL HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRDIYQESLKTIVAFKKMTSVQY HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure GMHQYFQSLSNLETIQRAPGFFKYQNHSVAAHSFKVAEVAQFLGDVEENAGQIVDWRAL CHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH YEKALNHDYNERFIGDIKTPVKYATPTLRTMLADVEHKLSQNFVQNEIPAEFQAAYSRRL HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SEGKDETLEGQILSVADKIDLLYESFGEIQKGNPEPVFRDIYQESLKTIVAFKKMTSVQY HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FLKAVLPEMLAEPFTHQDQLQALTTQILTAGPQSD HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA