Click here to switch to the map view.

The map label for this gene is yvyD [H]

Identifier: 28377598

GI number: 28377598

Start: 674619

End: 675185

Strand: Direct

Name: yvyD [H]

Synonym: lp_0737

Alternate gene names: 28377598

Gene position: 674619-675185 (Clockwise)

Preceding gene: 28377597

Following gene: 28377599

Centisome position: 20.39

GC content: 42.68

Gene sequence:

>567_bases
ATGCTAAATTTTAATATTCGCGGTGAAAATATCGAAGTGACCCAAGCAATTCGGGACTACGTTCAAAAACGGGTGGGTAA
GTTACAGAAGTACTTTGACAATAATGTTGACTCAATTGCCCATGTCAACTTAAAAGTTCACCCAGACAAGACGGCTAAAG
TCGAAGTCACCATTCCACTTCCCTATTTAGTTCTCCGGGCAGAAGAAACTTCTCCTGATATGTATGCTAGTGTTGATTTG
GTTACTGACAAGTTGGAACGCCAAATCCGCAAGTATAAAACTAAGGTTAACCGCAAATCCCGTGAAAAGGGTTATAAAGC
GATTGATTTTGCAGCGACTGATGAAACAGTTGCCGCTGCCGACAATGATCAGGACGATAAGTTAGACGTTGTACGTACGA
AGCGAGTGGCTTTAAAGCCAATGGATAATGAAGAAGCGATTCTGCAAATGGATATGCTCGGCCATGACTTCTTTATCTAC
GAAGACGCGGAAACGGACGCAATTAACATCGTCTATCGGCGTAACGATGGTCGTTACGGTTTGATTGAAACCGACGACAA
TCACTAA

Upstream 100 bases:

>100_bases
ATAGCGCTTTCTATTATAATGAATTTAAGCAAAGTAATTAAAGAGTGGTCCTTTAATTACTTTGGGTACACAGCAATGTG
TGTGAAGGGAGAGAAGATCT

Downstream 100 bases:

>100_bases
TTTTAAAAGCGCAACTTATGAGGACTGGTCAGTTGACCAGTTCTTTATTTTTATCCCGGAACGCCCGTATAACATATTGT
GATCATGAGAGTGACTTAGC

Product: ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLNFNIRGENIEVTQAIRDYVQKRVGKLQKYFDNNVDSIAHVNLKVHPDKTAKVEVTIPLPYLVLRAEETSPDMYASVDL
VTDKLERQIRKYKTKVNRKSREKGYKAIDFAATDETVAAADNDQDDKLDVVRTKRVALKPMDNEEAILQMDMLGHDFFIY
EDAETDAINIVYRRNDGRYGLIETDDNH

Sequences:

>Translated_188_residues
MLNFNIRGENIEVTQAIRDYVQKRVGKLQKYFDNNVDSIAHVNLKVHPDKTAKVEVTIPLPYLVLRAEETSPDMYASVDL
VTDKLERQIRKYKTKVNRKSREKGYKAIDFAATDETVAAADNDQDDKLDVVRTKRVALKPMDNEEAILQMDMLGHDFFIY
EDAETDAINIVYRRNDGRYGLIETDDNH
>Mature_188_residues
MLNFNIRGENIEVTQAIRDYVQKRVGKLQKYFDNNVDSIAHVNLKVHPDKTAKVEVTIPLPYLVLRAEETSPDMYASVDL
VTDKLERQIRKYKTKVNRKSREKGYKAIDFAATDETVAAADNDQDDKLDVVRTKRVALKPMDNEEAILQMDMLGHDFFIY
EDAETDAINIVYRRNDGRYGLIETDDNH

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21726; Mature: 21726

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFNIRGENIEVTQAIRDYVQKRVGKLQKYFDNNVDSIAHVNLKVHPDKTAKVEVTIPL
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECC
PYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSREKGYKAIDFAATDETVAAA
CEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHCHHHHHCCCEEEEEECCCCEEEEC
DNDQDDKLDVVRTKRVALKPMDNEEAILQMDMLGHDFFIYEDAETDAINIVYRRNDGRYG
CCCCCCCEEEEEECEEEECCCCCCHHEEEEECCCCEEEEEECCCCCEEEEEEEECCCEEE
LIETDDNH
EEECCCCC
>Mature Secondary Structure
MLNFNIRGENIEVTQAIRDYVQKRVGKLQKYFDNNVDSIAHVNLKVHPDKTAKVEVTIPL
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECC
PYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSREKGYKAIDFAATDETVAAA
CEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHCHHHHHCCCEEEEEECCCCEEEEC
DNDQDDKLDVVRTKRVALKPMDNEEAILQMDMLGHDFFIYEDAETDAINIVYRRNDGRYG
CCCCCCCEEEEEECEEEECCCCCCHHEEEEECCCCEEEEEECCCCCEEEEEEEECCCEEE
LIETDDNH
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]