| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is npsB [H]
Identifier: 28377462
GI number: 28377462
Start: 553290
End: 555707
Strand: Direct
Name: npsB [H]
Synonym: lp_0581
Alternate gene names: 28377462
Gene position: 553290-555707 (Clockwise)
Preceding gene: 28377461
Following gene: 28377463
Centisome position: 16.72
GC content: 36.06
Gene sequence:
>2418_bases ATGAATAGAGAAGAAGTCTTAAATGTGATTTTATCATATGCGGAAATCACACCTAATAGTCTTGCAGTTGTTGATAATTC TGACGAGTTAACATATAGCGAGTTGAGAGTAGCTGTTGAGAGGACTAGCCAGTTGTTGCAAAAAAATCAGCTTAATGATC AAATTGTTGTCTTGCGTTTGCCGCGAGGAGTCAAATTTACAGTAATGGTTTTAGCACTAACTAAGATGAAAATTACCTTC ATTCCTCAGGACATTGCGCAACCATTAGCAAGATTAGATGCAATGGTTGAAACTGCAGGTGCAGAAACTTTAATTGAACT TAAAGATGATCACTACACTTTTAGTACGGTACCAAATAGTAGTAAGAATCATTCTACGGCCTGGGCAATTTACTTTACTT CTGGTTCAACTGGCAATCCTAAGGGCGTTGAGATTCCTTTTCGAACAGTAGCAAATACTGTTGAAACACAAAAAGAAGAT TATCAATTAACGACGGATGATAGAGTAGCAAGTTTTACTCCATACTCATTCGTAGTTAGTTACTATGATCTTTTTTCTAG TCTTTACTCTGGATCAACATTGTATGTATTAGGAGAAACTGAGCGGCATGATTTAAATAAATTAGAGAAGTATTTACAAG ATAATAAGATCACTTTTATGAATGCTTCAACTATGATTGGTGAAATCATTATGCGATCCATGAAGTTACCAAGTATGCGT TTATTAACGTTGGCGGGGCAGCGTTTTCCAGATGTAGACATTGGTCAATTAAACTATCAAATTATGAATGTTTATGGTAA TACTGAATGTGCGTGTGCAACAATTTGTCGTGTAAGACCTGGTGAGACAGTGACAATTGGAAAACCAATTCGCAACATGC ATGCTTTGATTTTAGATGATCAACAACGTGTGCTACCGCATGGATCTGTTGGAGAGTTGTTTATTTATGGTGTTCAAGTA ACCAATGGGTATTTTTTAAACGAAAAGGCCACAAATAAAGCTTTTACCAGTGTTAGCTATCAAAATCAAAACATATGGGG CTATCGAACGGGAGATTACGCAAAAGTACTACCCAACGGTGAATTGGAATATCGTGGTCGTCGAGACAGTCAATATAAGA TTAATGGTGTGAGAATCGATTTGAGCGAAGTGGGGAGCGTATGTCGAGAAATTATTCCGAACCTTAAACAGTGTTATTTA GCGGTGAAAGCAAATTGTATTTATTGTTGGGTAACTAGTGCAAAAGCGATTGATGAATCTCAAATACTAAATGCACTTGC TAGTCGGTTACCAAGCGTTATGATACCCATTGGGATTCATCAACTAACAAGTTTCCCATTAAATATTAATGGAAAAATTG ATGAACGACGAATGATAAAGGAATGGTCGCGACAATCTCTAACCAAAGATAACCGTCATTTGTCAAAGTCTCAAAGGGAA AACGAACAATTTCTGATTAATGCATGGAGTGAAGTGCTTGATGCTGATCCAGATACAATTAACTATCAGAGTAACTTTAG AATGTTAGGGGCAACCTCGCTACAAATTATGGAATTGGGCGTTAGAATCTTGGATGAGCGACATAAACAATTAAACTTTG TCGATTTATACTATCATCCTGTACTGGCAGATATGGCCGCATTATTGTCTCAAAAAAATGTTTTTAAGGCTATTTATACG TTTGTGCCACGAACGGATGATATGGGTGACAAGCCTGCTCTCTTTGTAATTCACTCTGGTAATACTGGGAGTGATGTGTA TCGACCATTATTTACGGGAATTAAGCGGCCAAGCTTTCCGATATATGTCATTGAACCACATAATCTGTTGAATCCTGAAG ATCAAATTTATGGTATTGAAAATCTGGCAAAATATTATCTTCAAATGATCAACAAATTTTTGCCAGAAAGCTCAAAACGT GAAATTAATTTAATGGGATGGAGTTATGGTGGCGTTGTTGCTAGTGAGATGTGTTATCAGCTAGAGCATGAAACGAGTTT ACTACATGTGAATCAGTTGACTGTGTTAGATTCTTCATTTTATCTTAGCTCAGAAGATTTACAAAGAGTTCGTAAACGAG AAGCTAACGGATTTTATGCAAAATATTTTACAGAGACTCATATTTTTGAAGGAATGGATAAAAAGAATGTCACAACGGAA CGTTTAATTGCGAATAATCATCAAGTGTGTGAGGATCTTTTTAATTATCATTCTAAGCAAGTTAATGTTGCAACGACCTT TGTTCGTAGTATGGTAGAAGAGAATCCTTTAACAGATGAGCAAATCAAACTATTATTTAAGCATGTAACGATTAAAAATG TGTATGATGGTCATGATTATTTGTTTGTTCATGAGTCAAGTAGGAGCCTTATTCAGGATGTTTTGGGATTAGCTGCAAAG GTAGTTAAAGAAAAGTGA
Upstream 100 bases:
>100_bases CTGAAAAGTTTTCCACAGATACCTAGTAACCATAATTCATTATTGTGGGTTGTGGTGATGAGCTGGATATGCCAGAAAAG CATTAAATGTGAGGTGGAAG
Downstream 100 bases:
>100_bases AACAATTATTGTATTACTTGAATAATCAGAGCATGTATTCAAAATTAGAAAAATTTGTTAGGGCATTTGCTCCTGAGCGT TATCAGTATGCTATGAGTTT
Product: non-ribosomal peptide synthetase NpsB
Products: NA
Alternate protein names: Tyrocidine synthase II; ATP-dependent proline adenylase; ProA; Proline activase; ATP-dependent phenylalanine adenylase; PheA; Phenylalanine activase; ATP-dependent D-phenylalanine adenylase; D-PheA; D-phenylalanine activase; Phenylalanine racemase [ATP-hydrolyzing] [H]
Number of amino acids: Translated: 805; Mature: 805
Protein sequence:
>805_residues MNREEVLNVILSYAEITPNSLAVVDNSDELTYSELRVAVERTSQLLQKNQLNDQIVVLRLPRGVKFTVMVLALTKMKITF IPQDIAQPLARLDAMVETAGAETLIELKDDHYTFSTVPNSSKNHSTAWAIYFTSGSTGNPKGVEIPFRTVANTVETQKED YQLTTDDRVASFTPYSFVVSYYDLFSSLYSGSTLYVLGETERHDLNKLEKYLQDNKITFMNASTMIGEIIMRSMKLPSMR LLTLAGQRFPDVDIGQLNYQIMNVYGNTECACATICRVRPGETVTIGKPIRNMHALILDDQQRVLPHGSVGELFIYGVQV TNGYFLNEKATNKAFTSVSYQNQNIWGYRTGDYAKVLPNGELEYRGRRDSQYKINGVRIDLSEVGSVCREIIPNLKQCYL AVKANCIYCWVTSAKAIDESQILNALASRLPSVMIPIGIHQLTSFPLNINGKIDERRMIKEWSRQSLTKDNRHLSKSQRE NEQFLINAWSEVLDADPDTINYQSNFRMLGATSLQIMELGVRILDERHKQLNFVDLYYHPVLADMAALLSQKNVFKAIYT FVPRTDDMGDKPALFVIHSGNTGSDVYRPLFTGIKRPSFPIYVIEPHNLLNPEDQIYGIENLAKYYLQMINKFLPESSKR EINLMGWSYGGVVASEMCYQLEHETSLLHVNQLTVLDSSFYLSSEDLQRVRKREANGFYAKYFTETHIFEGMDKKNVTTE RLIANNHQVCEDLFNYHSKQVNVATTFVRSMVEENPLTDEQIKLLFKHVTIKNVYDGHDYLFVHESSRSLIQDVLGLAAK VVKEK
Sequences:
>Translated_805_residues MNREEVLNVILSYAEITPNSLAVVDNSDELTYSELRVAVERTSQLLQKNQLNDQIVVLRLPRGVKFTVMVLALTKMKITF IPQDIAQPLARLDAMVETAGAETLIELKDDHYTFSTVPNSSKNHSTAWAIYFTSGSTGNPKGVEIPFRTVANTVETQKED YQLTTDDRVASFTPYSFVVSYYDLFSSLYSGSTLYVLGETERHDLNKLEKYLQDNKITFMNASTMIGEIIMRSMKLPSMR LLTLAGQRFPDVDIGQLNYQIMNVYGNTECACATICRVRPGETVTIGKPIRNMHALILDDQQRVLPHGSVGELFIYGVQV TNGYFLNEKATNKAFTSVSYQNQNIWGYRTGDYAKVLPNGELEYRGRRDSQYKINGVRIDLSEVGSVCREIIPNLKQCYL AVKANCIYCWVTSAKAIDESQILNALASRLPSVMIPIGIHQLTSFPLNINGKIDERRMIKEWSRQSLTKDNRHLSKSQRE NEQFLINAWSEVLDADPDTINYQSNFRMLGATSLQIMELGVRILDERHKQLNFVDLYYHPVLADMAALLSQKNVFKAIYT FVPRTDDMGDKPALFVIHSGNTGSDVYRPLFTGIKRPSFPIYVIEPHNLLNPEDQIYGIENLAKYYLQMINKFLPESSKR EINLMGWSYGGVVASEMCYQLEHETSLLHVNQLTVLDSSFYLSSEDLQRVRKREANGFYAKYFTETHIFEGMDKKNVTTE RLIANNHQVCEDLFNYHSKQVNVATTFVRSMVEENPLTDEQIKLLFKHVTIKNVYDGHDYLFVHESSRSLIQDVLGLAAK VVKEK >Mature_805_residues MNREEVLNVILSYAEITPNSLAVVDNSDELTYSELRVAVERTSQLLQKNQLNDQIVVLRLPRGVKFTVMVLALTKMKITF IPQDIAQPLARLDAMVETAGAETLIELKDDHYTFSTVPNSSKNHSTAWAIYFTSGSTGNPKGVEIPFRTVANTVETQKED YQLTTDDRVASFTPYSFVVSYYDLFSSLYSGSTLYVLGETERHDLNKLEKYLQDNKITFMNASTMIGEIIMRSMKLPSMR LLTLAGQRFPDVDIGQLNYQIMNVYGNTECACATICRVRPGETVTIGKPIRNMHALILDDQQRVLPHGSVGELFIYGVQV TNGYFLNEKATNKAFTSVSYQNQNIWGYRTGDYAKVLPNGELEYRGRRDSQYKINGVRIDLSEVGSVCREIIPNLKQCYL AVKANCIYCWVTSAKAIDESQILNALASRLPSVMIPIGIHQLTSFPLNINGKIDERRMIKEWSRQSLTKDNRHLSKSQRE NEQFLINAWSEVLDADPDTINYQSNFRMLGATSLQIMELGVRILDERHKQLNFVDLYYHPVLADMAALLSQKNVFKAIYT FVPRTDDMGDKPALFVIHSGNTGSDVYRPLFTGIKRPSFPIYVIEPHNLLNPEDQIYGIENLAKYYLQMINKFLPESSKR EINLMGWSYGGVVASEMCYQLEHETSLLHVNQLTVLDSSFYLSSEDLQRVRKREANGFYAKYFTETHIFEGMDKKNVTTE RLIANNHQVCEDLFNYHSKQVNVATTFVRSMVEENPLTDEQIKLLFKHVTIKNVYDGHDYLFVHESSRSLIQDVLGLAAK VVKEK
Specific function: Activates the second to fourth amino acids in tyrocidine (in tyrocidine A, Pro, Phe, and D-Phe) and epimerizes the last one [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 3 acyl carrier domains [H]
Homologues:
Organism=Homo sapiens, GI45580730, Length=436, Percent_Identity=26.605504587156, Blast_Score=97, Evalue=7e-20, Organism=Escherichia coli, GI1786801, Length=803, Percent_Identity=25.653798256538, Blast_Score=185, Evalue=1e-47, Organism=Caenorhabditis elegans, GI32564422, Length=481, Percent_Identity=24.948024948025, Blast_Score=100, Evalue=5e-21, Organism=Caenorhabditis elegans, GI32564420, Length=481, Percent_Identity=24.948024948025, Blast_Score=100, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17550940, Length=680, Percent_Identity=22.5, Blast_Score=96, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17556356, Length=447, Percent_Identity=25.0559284116331, Blast_Score=95, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6319591, Length=675, Percent_Identity=22.0740740740741, Blast_Score=94, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6319699, Length=364, Percent_Identity=26.3736263736264, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24648676, Length=485, Percent_Identity=26.1855670103093, Blast_Score=126, Evalue=6e-29, Organism=Drosophila melanogaster, GI24648260, Length=291, Percent_Identity=23.7113402061856, Blast_Score=66, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010071 - InterPro: IPR009081 - InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR001242 - InterPro: IPR010060 - InterPro: IPR006163 - InterPro: IPR020806 - InterPro: IPR006162 [H]
Pfam domain/function: PF00501 AMP-binding; PF00668 Condensation; PF00550 PP-binding [H]
EC number: =5.1.1.11 [H]
Molecular weight: Translated: 91791; Mature: 91791
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: PS50075 ACP_DOMAIN ; PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNREEVLNVILSYAEITPNSLAVVDNSDELTYSELRVAVERTSQLLQKNQLNDQIVVLRL CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC PRGVKFTVMVLALTKMKITFIPQDIAQPLARLDAMVETAGAETLIELKDDHYTFSTVPNS CCCCCHHHHEEHHHHHEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCC SKNHSTAWAIYFTSGSTGNPKGVEIPFRTVANTVETQKEDYQLTTDDRVASFTPYSFVVS CCCCCEEEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHH YYDLFSSLYSGSTLYVLGETERHDLNKLEKYLQDNKITFMNASTMIGEIIMRSMKLPSMR HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCH LLTLAGQRFPDVDIGQLNYQIMNVYGNTECACATICRVRPGETVTIGKPIRNMHALILDD HHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHEECCCCCEEEECCCCCCCEEEEECC QQRVLPHGSVGELFIYGVQVTNGYFLNEKATNKAFTSVSYQNQNIWGYRTGDYAKVLPNG CHHHCCCCCCCCEEEEEEEEECCEEECCCCCCCHHEEEEECCCCEEEEECCCEEEECCCC ELEYRGRRDSQYKINGVRIDLSEVGSVCREIIPNLKQCYLAVKANCIYCWVTSAKAIDES CEEECCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH QILNALASRLPSVMIPIGIHQLTSFPLNINGKIDERRMIKEWSRQSLTKDNRHLSKSQRE HHHHHHHHHCCCEEEECCHHHHHCCCEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC NEQFLINAWSEVLDADPDTINYQSNFRMLGATSLQIMELGVRILDERHKQLNFVDLYYHP CHHHHHHHHHHHHCCCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEHHHH VLADMAALLSQKNVFKAIYTFVPRTDDMGDKPALFVIHSGNTGSDVYRPLFTGIKRPSFP HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCC IYVIEPHNLLNPEDQIYGIENLAKYYLQMINKFLPESSKREINLMGWSYGGVVASEMCYQ EEEECCCCCCCCHHHEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHH LEHETSLLHVNQLTVLDSSFYLSSEDLQRVRKREANGFYAKYFTETHIFEGMDKKNVTTE HHCCCCEEEEEEEEEEECCCEECHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCHH RLIANNHQVCEDLFNYHSKQVNVATTFVRSMVEENPLTDEQIKLLFKHVTIKNVYDGHDY HHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCE LFVHESSRSLIQDVLGLAAKVVKEK EEEECCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNREEVLNVILSYAEITPNSLAVVDNSDELTYSELRVAVERTSQLLQKNQLNDQIVVLRL CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC PRGVKFTVMVLALTKMKITFIPQDIAQPLARLDAMVETAGAETLIELKDDHYTFSTVPNS CCCCCHHHHEEHHHHHEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCC SKNHSTAWAIYFTSGSTGNPKGVEIPFRTVANTVETQKEDYQLTTDDRVASFTPYSFVVS CCCCCEEEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHH YYDLFSSLYSGSTLYVLGETERHDLNKLEKYLQDNKITFMNASTMIGEIIMRSMKLPSMR HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCH LLTLAGQRFPDVDIGQLNYQIMNVYGNTECACATICRVRPGETVTIGKPIRNMHALILDD HHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHEECCCCCEEEECCCCCCCEEEEECC QQRVLPHGSVGELFIYGVQVTNGYFLNEKATNKAFTSVSYQNQNIWGYRTGDYAKVLPNG CHHHCCCCCCCCEEEEEEEEECCEEECCCCCCCHHEEEEECCCCEEEEECCCEEEECCCC ELEYRGRRDSQYKINGVRIDLSEVGSVCREIIPNLKQCYLAVKANCIYCWVTSAKAIDES CEEECCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH QILNALASRLPSVMIPIGIHQLTSFPLNINGKIDERRMIKEWSRQSLTKDNRHLSKSQRE HHHHHHHHHCCCEEEECCHHHHHCCCEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC NEQFLINAWSEVLDADPDTINYQSNFRMLGATSLQIMELGVRILDERHKQLNFVDLYYHP CHHHHHHHHHHHHCCCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEHHHH VLADMAALLSQKNVFKAIYTFVPRTDDMGDKPALFVIHSGNTGSDVYRPLFTGIKRPSFP HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCC IYVIEPHNLLNPEDQIYGIENLAKYYLQMINKFLPESSKREINLMGWSYGGVVASEMCYQ EEEECCCCCCCCHHHEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHH LEHETSLLHVNQLTVLDSSFYLSSEDLQRVRKREANGFYAKYFTETHIFEGMDKKNVTTE HHCCCCEEEEEEEEEEECCCEECHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCHH RLIANNHQVCEDLFNYHSKQVNVATTFVRSMVEENPLTDEQIKLLFKHVTIKNVYDGHDY HHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCE LFVHESSRSLIQDVLGLAAKVVKEK EEEECCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9352938 [H]