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The map label for this gene is rfbU [H]

Identifier: 28199672

GI number: 28199672

Start: 2103535

End: 2104647

Strand: Reverse

Name: rfbU [H]

Synonym: PD1801

Alternate gene names: 28199672

Gene position: 2104647-2103535 (Counterclockwise)

Preceding gene: 28199673

Following gene: 28199671

Centisome position: 83.52

GC content: 57.5

Gene sequence:

>1113_bases
ATGAAGGTGTTGTTTGTGGGAACGTCCCGTGGAGGTGGGGGGGCTGAGAGTCATTTTGTCGGCCTAGTGCGCGCGATGGC
TGAGACCAATCACCAGAGTACGGCGTTGGTTCATCCGGATGGATTGATCGCACGTCAGTTGCAACAGACGGCGATACGGC
TGTTTACTGCTACGTTCCGTAACGTGATGGATCTACGTGGCTACCTAGCAATTGCGCGTGTGCTGCGTCTTGTTCATCCC
GATGTGTTGGTGGGTGACTTTGGTAAAGAGTATTGGCCTTTGTTGTTGATGGGACGCCTTTACCGCTTGCCGGTGGTGCT
GTTCCGGCATCGCTTGCCACCGATGAATCGTTTTTCGACCTATTGGGTGCCGCGCTTGGCAGATCGATTCTTCGCGGTCT
CTGCTTACGCGCGCCGCCACTATTTGGCTGAAGGGATGCCCCCAGAACGGGTACAGGTGTTGTATAACCCGGTGGATACT
GACGCGTTACGTCCCGATCCAAGAGTGCGTAGAGCAATGTTGCATGAGTTGGGTTGGGATGAGGATGTCCTTGTGGTGGG
GTGCTTCGGACGGATCCACGAAGGGAAGGGGGTGTTCGTCCTTGCTGAAGCAATGGAGCAGGCGATGCAGGAGGAGCCGC
GTTTGTGCTGTTTATGGATGGGTACAGGACTGCACGTGCAGCGCTTGACAGCCACCGTTGCCGACAGCCGATTCGCATCG
CGGCAGCGTGTGTTGGGTTGGGTGACTGACCCGGCGCGTTATTTCCAGGCGTTGGCGATGCTGGCGATGCCTTCTTTGTC
GCCGGAGACGTTTGGACGTGTCTCCGCAGAGGCGCAAGCATCCGGTGTGCCTGTGCTTGTGAGTGATGTGGGTGGTGCTG
CGGAGACATTGCAGGATGGTACGACCGGGATGCTGCTGCCCGCCGGGGACGTGCCTGCGTGGCGGAATGCGATTCTGGCA
TTTTGTGATCCGCAACTCCGGGCCGCGATGGCGGCAGCAGCGCCGAGTTTTGTAGAGGCACGTTTCAGTCAGCGGGTGAT
CGCAGCGGAATTTATCAGTGAACTGGAGCGTGTGATTTCAGATCGTCATCACATGATTGCACCAATGCGCTGA

Upstream 100 bases:

>100_bases
GCCAACATCTGTGGACATTGCCGCGCGTGCCGGTATCGTACCGTCACATCCTCCCTCAGTTCGCGTTACGTACATTGACT
GGTTATGAGGATCGTCGGGG

Downstream 100 bases:

>100_bases
CGCTCCAGACCATCACATGCAAATAGGCTTGATCTTTCCTTTGCCTGTTCTTGTCTGCATTCACTAACATTCGTGCCTTT
CATCCTCGCCATGTGTGTTT

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MKVLFVGTSRGGGGAESHFVGLVRAMAETNHQSTALVHPDGLIARQLQQTAIRLFTATFRNVMDLRGYLAIARVLRLVHP
DVLVGDFGKEYWPLLLMGRLYRLPVVLFRHRLPPMNRFSTYWVPRLADRFFAVSAYARRHYLAEGMPPERVQVLYNPVDT
DALRPDPRVRRAMLHELGWDEDVLVVGCFGRIHEGKGVFVLAEAMEQAMQEEPRLCCLWMGTGLHVQRLTATVADSRFAS
RQRVLGWVTDPARYFQALAMLAMPSLSPETFGRVSAEAQASGVPVLVSDVGGAAETLQDGTTGMLLPAGDVPAWRNAILA
FCDPQLRAAMAAAAPSFVEARFSQRVIAAEFISELERVISDRHHMIAPMR

Sequences:

>Translated_370_residues
MKVLFVGTSRGGGGAESHFVGLVRAMAETNHQSTALVHPDGLIARQLQQTAIRLFTATFRNVMDLRGYLAIARVLRLVHP
DVLVGDFGKEYWPLLLMGRLYRLPVVLFRHRLPPMNRFSTYWVPRLADRFFAVSAYARRHYLAEGMPPERVQVLYNPVDT
DALRPDPRVRRAMLHELGWDEDVLVVGCFGRIHEGKGVFVLAEAMEQAMQEEPRLCCLWMGTGLHVQRLTATVADSRFAS
RQRVLGWVTDPARYFQALAMLAMPSLSPETFGRVSAEAQASGVPVLVSDVGGAAETLQDGTTGMLLPAGDVPAWRNAILA
FCDPQLRAAMAAAAPSFVEARFSQRVIAAEFISELERVISDRHHMIAPMR
>Mature_370_residues
MKVLFVGTSRGGGGAESHFVGLVRAMAETNHQSTALVHPDGLIARQLQQTAIRLFTATFRNVMDLRGYLAIARVLRLVHP
DVLVGDFGKEYWPLLLMGRLYRLPVVLFRHRLPPMNRFSTYWVPRLADRFFAVSAYARRHYLAEGMPPERVQVLYNPVDT
DALRPDPRVRRAMLHELGWDEDVLVVGCFGRIHEGKGVFVLAEAMEQAMQEEPRLCCLWMGTGLHVQRLTATVADSRFAS
RQRVLGWVTDPARYFQALAMLAMPSLSPETFGRVSAEAQASGVPVLVSDVGGAAETLQDGTTGMLLPAGDVPAWRNAILA
FCDPQLRAAMAAAAPSFVEARFSQRVIAAEFISELERVISDRHHMIAPMR

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 41161; Mature: 41161

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLFVGTSRGGGGAESHFVGLVRAMAETNHQSTALVHPDGLIARQLQQTAIRLFTATFR
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
NVMDLRGYLAIARVLRLVHPDVLVGDFGKEYWPLLLMGRLYRLPVVLFRHRLPPMNRFST
HHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
YWVPRLADRFFAVSAYARRHYLAEGMPPERVQVLYNPVDTDALRPDPRVRRAMLHELGWD
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHCCCC
EDVLVVGCFGRIHEGKGVFVLAEAMEQAMQEEPRLCCLWMGTGLHVQRLTATVADSRFAS
CCEEEEEECCEEECCCCEEEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
RQRVLGWVTDPARYFQALAMLAMPSLSPETFGRVSAEAQASGVPVLVSDVGGAAETLQDG
HHHHHEEECCHHHHHHHHHHHHCCCCCHHHHHCCCCCHHCCCCCEEEECCCCHHHHHCCC
TTGMLLPAGDVPAWRNAILAFCDPQLRAAMAAAAPSFVEARFSQRVIAAEFISELERVIS
CCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
DRHHMIAPMR
CCHHHCCCCC
>Mature Secondary Structure
MKVLFVGTSRGGGGAESHFVGLVRAMAETNHQSTALVHPDGLIARQLQQTAIRLFTATFR
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
NVMDLRGYLAIARVLRLVHPDVLVGDFGKEYWPLLLMGRLYRLPVVLFRHRLPPMNRFST
HHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
YWVPRLADRFFAVSAYARRHYLAEGMPPERVQVLYNPVDTDALRPDPRVRRAMLHELGWD
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHCCCC
EDVLVVGCFGRIHEGKGVFVLAEAMEQAMQEEPRLCCLWMGTGLHVQRLTATVADSRFAS
CCEEEEEECCEEECCCCEEEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
RQRVLGWVTDPARYFQALAMLAMPSLSPETFGRVSAEAQASGVPVLVSDVGGAAETLQDG
HHHHHEEECCHHHHHHHHHHHHCCCCCHHHHHCCCCCHHCCCCCEEEECCCCHHHHHCCC
TTGMLLPAGDVPAWRNAILAFCDPQLRAAMAAAAPSFVEARFSQRVIAAEFISELERVIS
CCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
DRHHMIAPMR
CCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]