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The map label for this gene is ygdH [H]

Identifier: 28199493

GI number: 28199493

Start: 1869079

End: 1870473

Strand: Reverse

Name: ygdH [H]

Synonym: PD1616

Alternate gene names: 28199493

Gene position: 1870473-1869079 (Counterclockwise)

Preceding gene: 77747706

Following gene: 28199492

Centisome position: 74.23

GC content: 51.83

Gene sequence:

>1395_bases
ATGAAACACGGTAGTGAGAGGGTCCTGCGTGAGCGCACAGTAGTAGATGCCAGAATTTATCCAGCGAACTGTTTGGATCT
ATTGTCTCCAATGGAGGCGGCACGGCTGCGCGATATTTCTAATGGAGGGATACACGAGTCGTTGCGTCGTTGCGCATTGG
CGGTGCTGACCAGTGGGAGCGGTTTGGATGATCCACGTGCTGTCTGCGATCTATACCCTGATTTTGATATTCAAGTGATA
CAGCGTGATCGTGGTATGGCGATTGAGCTGAGCAATGCGCCGGCAATGGCATTCGTGGACGATGAAATCATCTGTGGCGT
GGCTGATTTGCTGTTTGCAGTGGTGCGTGATTTTGCCTATATGGCCATTGATCTTGGATCGGGTGATGCCGTTGCTTTAA
AGACCACTGATGGGATTACGAATGCGGTGTTTGCGCAGTTGCGCAACGCGCGCATTTTGCAGGTATCTGCAGAACCTAAT
CTTGTCGTGTGCTGGGGAGGTCACTCGATCTCACGCAATGAATACCTGTACACCAAGCAAGTGGGCTATGCGCTTGGTTT
GCGTGGCTTGGACATTTGTACAGGGTGTGGTCCAGGTGCGATGAAGGGGCCAATGAAAGGGGCTACTATCGCTCACGCCA
AGCAGCGTCGCCACGATAAGCGTTATATCGGTATCAGCGAACCAGGCATCATCGCTGCCGAATCGCCAAATCCCATTGTG
AATCACTTGGTCATCATGCCGGATATTGAGAAGCGCTTGGAGGCTTTTGTTCGCCTTGCTCACGGCATCATTGTGTTTCC
TGGTGGTGTGGGAACGACTGAAGAGATTTTGTATTTGCTGGGTTTGCTGTTACGTGAGGAGAATCACGGGTTACCGTTTC
CGTTGATCCTGACAGGTCCGGCGAGCGCTGCACCGTATTTTGAGCAGATTGATCACTTTATCCGTTTGACGTTGGGCAAC
CAGGCCGCGTCATGCTATGAGATCGTGATTGGGGACCCGGTTGCTGTAGCACGCAAAATCAGCGATGGCATCCGCCAAGT
TCGCGAATTCCGTGAAGAACGCAAGGATGCTTATTACTTCAATTGGTCCTTACATATTCCGTTGGAGTTTCAACAGCCGT
TTATCCCTACCCATGAGGCTGTCGCTGCGTTGGACTTGCATCATAGTCGGCCGGTGCATGCATTAGCGGCAGACTTGCGC
CGTGCGTTCTCCAGCATTGTTGCTGGCAACGTCAAGGAAGAAGGCATCCGTCAGGTCGAGCAGTTCGGCCCATTCCGGAT
TCATGGTGATCCGTCGATGATGCAAGCGTTGGATGCGCTGTTGTCCGCGTTTGTTGAACAGAAGCGGATGAGTCTTTCTG
GGAAGTATGAACCTTGTTATCAGGTCTCTTCTTGA

Upstream 100 bases:

>100_bases
CTGACGTTGTGTGACCTCCTCTGGTGAGTGCCGGACATGCCGATAGTAGGAAAGAGTGCGCTACAGTTTTGTCTATTTAG
AAAAATTACAATGGTGAGGT

Downstream 100 bases:

>100_bases
GTCATTAAAAGCGATTGAATTAACATTTTTTTGACGCTCATCGGTTAACGCTGACCGTTTGTCAGACAGTGTTTGCGCTG
CACTGTACTGACAGTGTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MKHGSERVLRERTVVDARIYPANCLDLLSPMEAARLRDISNGGIHESLRRCALAVLTSGSGLDDPRAVCDLYPDFDIQVI
QRDRGMAIELSNAPAMAFVDDEIICGVADLLFAVVRDFAYMAIDLGSGDAVALKTTDGITNAVFAQLRNARILQVSAEPN
LVVCWGGHSISRNEYLYTKQVGYALGLRGLDICTGCGPGAMKGPMKGATIAHAKQRRHDKRYIGISEPGIIAAESPNPIV
NHLVIMPDIEKRLEAFVRLAHGIIVFPGGVGTTEEILYLLGLLLREENHGLPFPLILTGPASAAPYFEQIDHFIRLTLGN
QAASCYEIVIGDPVAVARKISDGIRQVREFREERKDAYYFNWSLHIPLEFQQPFIPTHEAVAALDLHHSRPVHALAADLR
RAFSSIVAGNVKEEGIRQVEQFGPFRIHGDPSMMQALDALLSAFVEQKRMSLSGKYEPCYQVSS

Sequences:

>Translated_464_residues
MKHGSERVLRERTVVDARIYPANCLDLLSPMEAARLRDISNGGIHESLRRCALAVLTSGSGLDDPRAVCDLYPDFDIQVI
QRDRGMAIELSNAPAMAFVDDEIICGVADLLFAVVRDFAYMAIDLGSGDAVALKTTDGITNAVFAQLRNARILQVSAEPN
LVVCWGGHSISRNEYLYTKQVGYALGLRGLDICTGCGPGAMKGPMKGATIAHAKQRRHDKRYIGISEPGIIAAESPNPIV
NHLVIMPDIEKRLEAFVRLAHGIIVFPGGVGTTEEILYLLGLLLREENHGLPFPLILTGPASAAPYFEQIDHFIRLTLGN
QAASCYEIVIGDPVAVARKISDGIRQVREFREERKDAYYFNWSLHIPLEFQQPFIPTHEAVAALDLHHSRPVHALAADLR
RAFSSIVAGNVKEEGIRQVEQFGPFRIHGDPSMMQALDALLSAFVEQKRMSLSGKYEPCYQVSS
>Mature_464_residues
MKHGSERVLRERTVVDARIYPANCLDLLSPMEAARLRDISNGGIHESLRRCALAVLTSGSGLDDPRAVCDLYPDFDIQVI
QRDRGMAIELSNAPAMAFVDDEIICGVADLLFAVVRDFAYMAIDLGSGDAVALKTTDGITNAVFAQLRNARILQVSAEPN
LVVCWGGHSISRNEYLYTKQVGYALGLRGLDICTGCGPGAMKGPMKGATIAHAKQRRHDKRYIGISEPGIIAAESPNPIV
NHLVIMPDIEKRLEAFVRLAHGIIVFPGGVGTTEEILYLLGLLLREENHGLPFPLILTGPASAAPYFEQIDHFIRLTLGN
QAASCYEIVIGDPVAVARKISDGIRQVREFREERKDAYYFNWSLHIPLEFQQPFIPTHEAVAALDLHHSRPVHALAADLR
RAFSSIVAGNVKEEGIRQVEQFGPFRIHGDPSMMQALDALLSAFVEQKRMSLSGKYEPCYQVSS

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=450, Percent_Identity=52.8888888888889, Blast_Score=476, Evalue=1e-135,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 51037; Mature: 51037

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHGSERVLRERTVVDARIYPANCLDLLSPMEAARLRDISNGGIHESLRRCALAVLTSGS
CCCCHHHHHHHHHHHEEEECCHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
GLDDPRAVCDLYPDFDIQVIQRDRGMAIELSNAPAMAFVDDEIICGVADLLFAVVRDFAY
CCCCCHHHHHCCCCCCEEEEECCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHE
MAIDLGSGDAVALKTTDGITNAVFAQLRNARILQVSAEPNLVVCWGGHSISRNEYLYTKQ
EEEEECCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEH
VGYALGLRGLDICTGCGPGAMKGPMKGATIAHAKQRRHDKRYIGISEPGIIAAESPNPIV
HHHHHCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCEEEECCCCHHH
NHLVIMPDIEKRLEAFVRLAHGIIVFPGGVGTTEEILYLLGLLLREENHGLPFPLILTGP
HEEEECCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECC
ASAAPYFEQIDHFIRLTLGNQAASCYEIVIGDPVAVARKISDGIRQVREFREERKDAYYF
CCCCHHHHHHHHHEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
NWSLHIPLEFQQPFIPTHEAVAALDLHHSRPVHALAADLRRAFSSIVAGNVKEEGIRQVE
EEEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QFGPFRIHGDPSMMQALDALLSAFVEQKRMSLSGKYEPCYQVSS
HCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
>Mature Secondary Structure
MKHGSERVLRERTVVDARIYPANCLDLLSPMEAARLRDISNGGIHESLRRCALAVLTSGS
CCCCHHHHHHHHHHHEEEECCHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
GLDDPRAVCDLYPDFDIQVIQRDRGMAIELSNAPAMAFVDDEIICGVADLLFAVVRDFAY
CCCCCHHHHHCCCCCCEEEEECCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHE
MAIDLGSGDAVALKTTDGITNAVFAQLRNARILQVSAEPNLVVCWGGHSISRNEYLYTKQ
EEEEECCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEH
VGYALGLRGLDICTGCGPGAMKGPMKGATIAHAKQRRHDKRYIGISEPGIIAAESPNPIV
HHHHHCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCEEEECCCCHHH
NHLVIMPDIEKRLEAFVRLAHGIIVFPGGVGTTEEILYLLGLLLREENHGLPFPLILTGP
HEEEECCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECC
ASAAPYFEQIDHFIRLTLGNQAASCYEIVIGDPVAVARKISDGIRQVREFREERKDAYYF
CCCCHHHHHHHHHEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
NWSLHIPLEFQQPFIPTHEAVAALDLHHSRPVHALAADLRRAFSSIVAGNVKEEGIRQVE
EEEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QFGPFRIHGDPSMMQALDALLSAFVEQKRMSLSGKYEPCYQVSS
HCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]