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The map label for this gene is yubD [H]

Identifier: 28199209

GI number: 28199209

Start: 1552066

End: 1552797

Strand: Reverse

Name: yubD [H]

Synonym: PD1324

Alternate gene names: 28199209

Gene position: 1552797-1552066 (Counterclockwise)

Preceding gene: 28199212

Following gene: 28199208

Centisome position: 61.62

GC content: 57.92

Gene sequence:

>732_bases
ATGATTGTTGCGTCATCTGCTGCGTACAGGCTGCACCAAGGCGACGCACTGCGGCTGCTTTGCGGCATAGACAGCGCCAG
CGTGGACGCGGTGATTACCGATCCGCCGTACTGTTCCGGTGCGATGCGGATGGCGGATCGCTTCAAGCCCACGAAAAGAA
AATATATCAACAACGGCACGAAACACGTTGCCCCTGATTTTGATTGCGACTTCCGCGACCACCGAGGTTTTTTAGCGTGG
TCCAGCCAATGGCTTTCAGAGTGTCGCCGCGTCACGCGCCCTGGTGGTGTGCTTTTAGTGTTTACTGATTGGCGGATGCT
GCCAACGCTCACCGATGCCGTACAGAGTGCAGGCTGGGCGTGGCAGGGCATTGTGGTATGGGATAAGACGCCTGCATGTC
GTCCCCAGCTAGGCCGGTTTCGCAGCCAAGCTGAATTTATCGTCTGGGCGTCCTGCGGCCTGATGAATCCCAAAGCGCAT
CCGGTCACGCCGGTAGGCGTTTTTGCTACCGGCACAGCCCCCCGCGAAAAGCGGCACCAAGTGGGGAAGCCGTTAGCGCT
GATGGAGCATCTGGTAAAGATCGTCCCCCCTGCCTCTACGGTCCTTGATCCATTTGCAGGCAGCGGCACAACCGGCGTTG
CCGCCTTGCGTGCTGGACATCGGTTTATTGGGATGGAGCTATCACCGTGGTACTGCGATGTAACGAAGCAGCGTTTAGCA
GATAGCACGTAA

Upstream 100 bases:

>100_bases
TCTTATGATAATTCCATTATAAAACAATGGGTTATAACGGTCACATACTGTTGGGTGCGATGATAGCCTATCATTCATAT
ATTTTAGGCACTAAAACCTT

Downstream 100 bases:

>100_bases
CACGCCGCTGAGTGAAGCGCGTTCTAATCCCCGCTGTTTAGCGGGATTTTTTTTGGCTCATACCGCCTTCGAGCGGTTTT
TTGCGTACTGGAGTCCCCCC

Product: site-specific DNA-methyltransferase

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MIVASSAAYRLHQGDALRLLCGIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDCDFRDHRGFLAW
SSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKTPACRPQLGRFRSQAEFIVWASCGLMNPKAH
PVTPVGVFATGTAPREKRHQVGKPLALMEHLVKIVPPASTVLDPFAGSGTTGVAALRAGHRFIGMELSPWYCDVTKQRLA
DST

Sequences:

>Translated_243_residues
MIVASSAAYRLHQGDALRLLCGIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDCDFRDHRGFLAW
SSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKTPACRPQLGRFRSQAEFIVWASCGLMNPKAH
PVTPVGVFATGTAPREKRHQVGKPLALMEHLVKIVPPASTVLDPFAGSGTTGVAALRAGHRFIGMELSPWYCDVTKQRLA
DST
>Mature_243_residues
MIVASSAAYRLHQGDALRLLCGIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGTKHVAPDFDCDFRDHRGFLAW
SSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWAWQGIVVWDKTPACRPQLGRFRSQAEFIVWASCGLMNPKAH
PVTPVGVFATGTAPREKRHQVGKPLALMEHLVKIVPPASTVLDPFAGSGTTGVAALRAGHRFIGMELSPWYCDVTKQRLA
DST

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 26766; Mature: 26766

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVASSAAYRLHQGDALRLLCGIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGT
CEEECCCCEEECCCCEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHCCCC
KHVAPDFDCDFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWA
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCE
WQGIVVWDKTPACRPQLGRFRSQAEFIVWASCGLMNPKAHPVTPVGVFATGTAPREKRHQ
EEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHH
VGKPLALMEHLVKIVPPASTVLDPFAGSGTTGVAALRAGHRFIGMELSPWYCDVTKQRLA
CCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHCCCEEEEEECCCCEEHHHHHHCC
DST
CCC
>Mature Secondary Structure
MIVASSAAYRLHQGDALRLLCGIDSASVDAVITDPPYCSGAMRMADRFKPTKRKYINNGT
CEEECCCCEEECCCCEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHCCCC
KHVAPDFDCDFRDHRGFLAWSSQWLSECRRVTRPGGVLLVFTDWRMLPTLTDAVQSAGWA
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCE
WQGIVVWDKTPACRPQLGRFRSQAEFIVWASCGLMNPKAHPVTPVGVFATGTAPREKRHQ
EEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHH
VGKPLALMEHLVKIVPPASTVLDPFAGSGTTGVAALRAGHRFIGMELSPWYCDVTKQRLA
CCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHCCCEEEEEECCCCEEHHHHHHCC
DST
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]