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The map label for this gene is lycV [H]

Identifier: 28199208

GI number: 28199208

Start: 1551393

End: 1552013

Strand: Reverse

Name: lycV [H]

Synonym: PD1323

Alternate gene names: 28199208

Gene position: 1552013-1551393 (Counterclockwise)

Preceding gene: 28199209

Following gene: 28199206

Centisome position: 61.59

GC content: 56.04

Gene sequence:

>621_bases
TTGGCTCATACCGCCTTCGAGCGGTTTTTTGCGTACTGGAGTCCCCCCATGCAGACCATTGGCGAAGAAGGCATTGCACT
CATCAAGTTTTTTGAGGGTTGCAAGCTGAGTCCGTACACCTGTCCTGGTGGTGTGTTGACGATTGGCTATGGCGAGACGG
GCAAGCACGTCGTACCAGGGTTGCGGCTTACCAATGAGCAGGAAGCAGATGCGCGGTTACGTGCACGCTTAGCGAAAGAA
TTTGAGCCAGCGGTACGGCGACATGTGAAGGTGACTTTGGCGCAACATCAATTTGATGCGTTGGTATCGCTGAGCTTCAA
CATTGGTGCGGGTGCGTTCCACCGCTCGACGCTGTTACGCAAGCTTAATGCCGGTGATGTGGCTGGTGCGGCGGAGCAGT
TTCATGTGTGGAAATGGGCGGGGGGTAGTATCCAGCAATCGCCTCCAAATCAATGTGATACATGGCCGCAAAGGCGGCAA
AGGCCCCGACACCGCCGCCATACCCCAAGGCCAATTCCTGCACTTTGCCGATTTGGCGTTGCTGCTTGGTCACGGCCTGG
GGCGCTATCCCGAATGAATGGGCGTAGGCGCGCTTGTAAATGTCGTCCCCTTTGCGAATAG

Upstream 100 bases:

>100_bases
CCGTGGTACTGCGATGTAACGAAGCAGCGTTTAGCAGATAGCACGTAACACGCCGCTGAGTGAAGCGCGTTCTAATCCCC
GCTGTTTAGCGGGATTTTTT

Downstream 100 bases:

>100_bases
GCGCGTGCTCGGCATTCCATTGCAAGGTGATCGGTGCCCCGCGCAGTGCGCCGTGAGTGATGGCCTCGCCGCTGTGCCAT
GTACCATCCACCCCTTGGCA

Product: phage-related lysozyme

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAHTAFERFFAYWSPPMQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRARLAKE
FEPAVRRHVKVTLAQHQFDALVSLSFNIGAGAFHRSTLLRKLNAGDVAGAAEQFHVWKWAGGSIQQSPPNQCDTWPQRRQ
RPRHRRHTPRPIPALCRFGVAAWSRPGALSRMNGRRRACKCRPLCE

Sequences:

>Translated_206_residues
MAHTAFERFFAYWSPPMQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRARLAKE
FEPAVRRHVKVTLAQHQFDALVSLSFNIGAGAFHRSTLLRKLNAGDVAGAAEQFHVWKWAGGSIQQSPPNQCDTWPQRRQ
RPRHRRHTPRPIPALCRFGVAAWSRPGALSRMNGRRRACKCRPLCE
>Mature_205_residues
AHTAFERFFAYWSPPMQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRARLAKEF
EPAVRRHVKVTLAQHQFDALVSLSFNIGAGAFHRSTLLRKLNAGDVAGAAEQFHVWKWAGGSIQQSPPNQCDTWPQRRQR
PRHRRHTPRPIPALCRFGVAAWSRPGALSRMNGRRRACKCRPLCE

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=115, Percent_Identity=38.2608695652174, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 23128; Mature: 22997

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTAFERFFAYWSPPMQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPG
CCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEECCC
LRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQHQFDALVSLSFNIGAGAFHRSTLLR
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHH
KLNAGDVAGAAEQFHVWKWAGGSIQQSPPNQCDTWPQRRQRPRHRRHTPRPIPALCRFGV
HCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCHHHHHHHHH
AAWSRPGALSRMNGRRRACKCRPLCE
HHCCCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AHTAFERFFAYWSPPMQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPG
CHHHHHHHHHHCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEECCC
LRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQHQFDALVSLSFNIGAGAFHRSTLLR
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHH
KLNAGDVAGAAEQFHVWKWAGGSIQQSPPNQCDTWPQRRQRPRHRRHTPRPIPALCRFGV
HCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCHHHHHHHHH
AAWSRPGALSRMNGRRRACKCRPLCE
HHCCCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]