Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28199134
Identifier: 28199134
GI number: 28199134
Start: 1458553
End: 1458954
Strand: Reverse
Name: 28199134
Synonym: PD1248
Alternate gene names: NA
Gene position: 1458954-1458553 (Counterclockwise)
Preceding gene: 28199135
Following gene: 28199132
Centisome position: 57.9
GC content: 40.8
Gene sequence:
>402_bases ATGCTGACCCAAGAACAAATAGATTTTATTTATGAGGATTTAATCCATGCCTTCGATTTCCTTTGGTTTAATGTAGGAGA TGCGCATGGAATATATGCTGCCCAAACAGATAAAGAGTCATTTGCAGAAAGAAAAAATGATTTCCTTTTTCTACTAGGTA AATTACTGGATGAAGGCAAACTCAAACTTGCTAAAAAGGGCAAATTTCTCAGCGGCACCACCACCGAATTAGTGGAAATG TTTAGAAAATCATTCCCTGATTCGGATGAAGCAGTTGATCTGGGAGGAGCAGGCATTTGGTTCTTTACAGACGAGTGCCC CGCTGGAGCGGTGTGGGTCTTTAAACAGGAGGGGGAAAATGAGCAGGAAGAAAATAATGAAGATCATTACCTATGGACGT GA
Upstream 100 bases:
>100_bases TTGAGTGAATGGAGATGGGTGATTACCTTCCTAAATTTCCCGGATCTTATGGCTGAAGTTTCCAATAGAAAAGCGATCGA ACTAATATTTAGGTGATAAT
Downstream 100 bases:
>100_bases CGTATTTTCATGCCTGAGATGCCTGAGATGATGCCTTATTAACCTCATACCTTGTTCAGGTGATTTATTTACATACAAAA CCCATCTGCAACCCACAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MLTQEQIDFIYEDLIHAFDFLWFNVGDAHGIYAAQTDKESFAERKNDFLFLLGKLLDEGKLKLAKKGKFLSGTTTELVEM FRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKQEGENEQEENNEDHYLWT
Sequences:
>Translated_133_residues MLTQEQIDFIYEDLIHAFDFLWFNVGDAHGIYAAQTDKESFAERKNDFLFLLGKLLDEGKLKLAKKGKFLSGTTTELVEM FRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKQEGENEQEENNEDHYLWT >Mature_133_residues MLTQEQIDFIYEDLIHAFDFLWFNVGDAHGIYAAQTDKESFAERKNDFLFLLGKLLDEGKLKLAKKGKFLSGTTTELVEM FRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKQEGENEQEENNEDHYLWT
Specific function: Unknown
COG id: COG3792
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15300; Mature: 15300
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTQEQIDFIYEDLIHAFDFLWFNVGDAHGIYAAQTDKESFAERKNDFLFLLGKLLDEGK CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCHHHHHHHHHCCCC LKLAKKGKFLSGTTTELVEMFRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKQEGEN EEHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCEEEEECCCCCC EQEENNEDHYLWT CCCCCCCCCEEEC >Mature Secondary Structure MLTQEQIDFIYEDLIHAFDFLWFNVGDAHGIYAAQTDKESFAERKNDFLFLLGKLLDEGK CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCHHHHHHHHHCCCC LKLAKKGKFLSGTTTELVEMFRKSFPDSDEAVDLGGAGIWFFTDECPAGAVWVFKQEGEN EEHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCEEEEECCCCCC EQEENNEDHYLWT CCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA