Definition | Xylella fastidiosa Temecula1, complete genome. |
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Accession | NC_004556 |
Length | 2,519,802 |
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The map label for this gene is 28199129
Identifier: 28199129
GI number: 28199129
Start: 1444553
End: 1445692
Strand: Reverse
Name: 28199129
Synonym: PD1242
Alternate gene names: NA
Gene position: 1445692-1444553 (Counterclockwise)
Preceding gene: 28199130
Following gene: 28199128
Centisome position: 57.37
GC content: 52.37
Gene sequence:
>1140_bases GTGACCGCCCTGACCCTGGCCGCCGGCCAACAAGTGACCGGCCCGGCCACCCAAATGCTGCAAAACGCCGCAGTCAACTA CATCCAAAGCCTGGGCGCCCGCGAAATCAAAGACCTTGCCGACACCCTGGGCAGCGACACCGCCCGCAGCGCCCTGCAAG GCCTCCTGGGTTGTGCCGGTGCCGCCGCCCAAGGCCAGGCTTGTGGTGCTGGCGCGGTAGGTGGTGCCGCCGCCGTTGTC ATCAACAGCCTTCTAGACCGCGCCAACGGTGCTGAAGCGGCCAGCCTCAGCGCTGAAGAAAAACAACACCGTACCGACCT AGTCACCAGCCTGGTGGCCGGCATCACCACCGCCGCCGGAGGCGATGCCGCCGTCAGCAGCGCCGCCGCCCGCCTGGAAA CCGAAAACAACGCCGCCTTTATCCCAGTGATTCTTGGCGCCGTCTGGCTAGCCGATAAAGGCATCACCGCCTATCAAGCT TGGCAAGACATCAAAGCGATTCGTTCCGGAGAAAAAACCCTAGAACAAGTGGCCCTAGAAAGAGGGCAGGACTACGTCAC CTCCATAGTGATTGGCAACCTTGCCAAATACGGCCTTAAAGCGGCAATGATCGGCGGTCGCTGGATTTCTGGCACCGCAA AAGAGATTGCCAATGCAGAAAAAGAAGCGCTTAGGCAAATAAAAAATAACCCCAAAGGCCCTGATTTAACCCAAAAACCG CCTGGTCAAATCATGGCGCTGCAGCGGCAAAAGCGCCTGGATGATGTGAAAAGTGTGATTGGCAGGCGTAGTCAGAAGAA TGAATTAGTTGTTGATGGTATAAAATTTGAATACGTACCGTATGACCCCTTAGTCAAAGGGGGCAGTAATAAAGCGGGTA ATGTGAGGGTATTTAAATCAGAAGCTTTAACTGATAAGCAGATTATGAATTATGCACAGCAATTGGCGGGAGATGTGCCT TTAAAGAAGATAAAGGAAGGTCTTTTTGCAGCTAAATTGAGTGATGGGACCACGGTGAATTTGAGATCTTTTTCTAAATC ACAAGACTTGACTAAAGCAAGATGGACGATTGATATACAAAATAATCCCTCTTTGATGGAGCTTACAAAAACCGACAAAG TTGAACTTAAATTTAGGTGA
Upstream 100 bases:
>100_bases GAACCTGCCGCTTAAAGTCGGCTTTGACATCGTCGCCGCCCTACAACAACGCATCCAAAACAACACCACCTGGGAACTGG GTGGCACCGGCCACACCATC
Downstream 100 bases:
>100_bases TAGGTGATGACATGTTAACGCAAGAACAGATAGATGATATTTGTGAGAATTTAGGGGGGGCTTTGGATGGACTTTGGAGT TGTATAAGGAGGATCTATGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAGAAAQGQACGAGAVGGAAAVV INSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQA WQDIKAIRSGEKTLEQVALERGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKP PGQIMALQRQKRLDDVKSVIGRRSQKNELVVDGIKFEYVPYDPLVKGGSNKAGNVRVFKSEALTDKQIMNYAQQLAGDVP LKKIKEGLFAAKLSDGTTVNLRSFSKSQDLTKARWTIDIQNNPSLMELTKTDKVELKFR
Sequences:
>Translated_379_residues MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAGAAAQGQACGAGAVGGAAAVV INSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQA WQDIKAIRSGEKTLEQVALERGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKP PGQIMALQRQKRLDDVKSVIGRRSQKNELVVDGIKFEYVPYDPLVKGGSNKAGNVRVFKSEALTDKQIMNYAQQLAGDVP LKKIKEGLFAAKLSDGTTVNLRSFSKSQDLTKARWTIDIQNNPSLMELTKTDKVELKFR >Mature_378_residues TALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAGAAAQGQACGAGAVGGAAAVVI NSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQAW QDIKAIRSGEKTLEQVALERGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKPP GQIMALQRQKRLDDVKSVIGRRSQKNELVVDGIKFEYVPYDPLVKGGSNKAGNVRVFKSEALTDKQIMNYAQQLAGDVPL KKIKEGLFAAKLSDGTTVNLRSFSKSQDLTKARWTIDIQNNPSLMELTKTDKVELKFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40090; Mature: 39959
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAG CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC AAAQGQACGAGAVGGAAAVVINSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCC GDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQAWQDIKAIRSGEKTLEQVALE CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKP HCHHHHHHHHHHHHHHHHHHHHEECCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PGQIMALQRQKRLDDVKSVIGRRSQKNELVVDGIKFEYVPYDPLVKGGSNKAGNVRVFKS CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEECCCCHHHCCCCCCCCCEEEEHH EALTDKQIMNYAQQLAGDVPLKKIKEGLFAAKLSDGTTVNLRSFSKSQDLTKARWTIDIQ HHCCHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCEEEECCCCCCCCCCEEEEEEEEC NNPSLMELTKTDKVELKFR CCCCEEEEECCCCEEEEEC >Mature Secondary Structure TALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAG CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC AAAQGQACGAGAVGGAAAVVINSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCC GDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQAWQDIKAIRSGEKTLEQVALE CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKP HCHHHHHHHHHHHHHHHHHHHHEECCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PGQIMALQRQKRLDDVKSVIGRRSQKNELVVDGIKFEYVPYDPLVKGGSNKAGNVRVFKS CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEECCCCHHHCCCCCCCCCEEEEHH EALTDKQIMNYAQQLAGDVPLKKIKEGLFAAKLSDGTTVNLRSFSKSQDLTKARWTIDIQ HHCCHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCEEEECCCCCCCCCCEEEEEEEEC NNPSLMELTKTDKVELKFR CCCCEEEEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA