Definition | Xylella fastidiosa Temecula1, complete genome. |
---|---|
Accession | NC_004556 |
Length | 2,519,802 |
Click here to switch to the map view.
The map label for this gene is 28199077
Identifier: 28199077
GI number: 28199077
Start: 1386090
End: 1386527
Strand: Reverse
Name: 28199077
Synonym: PD1187
Alternate gene names: NA
Gene position: 1386527-1386090 (Counterclockwise)
Preceding gene: 28199078
Following gene: 28199076
Centisome position: 55.03
GC content: 57.76
Gene sequence:
>438_bases ATGTCCGTCTTCGACCCCAAACAAGTGTCGGTGCTGCTCAATGGAACCCAGATCAAAGACTGGGCCGATGGCACGGACGT CATCGACGCCAAACACAATGCTGATGCCGGTGCCTACACCATCGGGGCCAGCGGCACGGGCGTGTTTGTCGCCAACGCGG ATCGGTCCGGCACCTTAACCTTGAAAATCAAACAGCACAGCGCCGACAACGCCTTTTTGAGCAGGCGACTGGCGCAGCAA CGCGGCGCGATCCAGTCCTTCACCCCCTTCACCCTGGATATCCGTGACCTGTTGAATCAGGACGTGGTGACAGCCACCCA AGGGTATTTCACCCCCCCCCCAGGATTTACCCGGGGCGCCGGACACAATCCAGAAACCTGGACACTGGTGTTTGAAGTGA TGGACATCACTCTAGAAAAAGGCTTTGGCAACGCATGA
Upstream 100 bases:
>100_bases CCAAGCGCGCCGGGCACCGCCACTTCAGATCGCCGTGAAGCTGGCCGGTGCCATCCATGCGGTGGACGTCATCATCCACT TTGACCGATAAAGGAATCCC
Downstream 100 bases:
>100_bases ACAATGAACATCGTTTTGAAATAGATGGCATCACCTACCTGATGACCCCGGCGAATGCGATGGCGGCCTGGCAATCGCTC AAACGCGCCGGGGTGCTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MSVFDPKQVSVLLNGTQIKDWADGTDVIDAKHNADAGAYTIGASGTGVFVANADRSGTLTLKIKQHSADNAFLSRRLAQQ RGAIQSFTPFTLDIRDLLNQDVVTATQGYFTPPPGFTRGAGHNPETWTLVFEVMDITLEKGFGNA
Sequences:
>Translated_145_residues MSVFDPKQVSVLLNGTQIKDWADGTDVIDAKHNADAGAYTIGASGTGVFVANADRSGTLTLKIKQHSADNAFLSRRLAQQ RGAIQSFTPFTLDIRDLLNQDVVTATQGYFTPPPGFTRGAGHNPETWTLVFEVMDITLEKGFGNA >Mature_144_residues SVFDPKQVSVLLNGTQIKDWADGTDVIDAKHNADAGAYTIGASGTGVFVANADRSGTLTLKIKQHSADNAFLSRRLAQQR GAIQSFTPFTLDIRDLLNQDVVTATQGYFTPPPGFTRGAGHNPETWTLVFEVMDITLEKGFGNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15616; Mature: 15484
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVFDPKQVSVLLNGTQIKDWADGTDVIDAKHNADAGAYTIGASGTGVFVANADRSGTLT CCCCCCCEEEEEECCCEECCCCCCCCEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEE LKIKQHSADNAFLSRRLAQQRGAIQSFTPFTLDIRDLLNQDVVTATQGYFTPPPGFTRGA EEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCCCCEEECCCCCCCCCCCCCCC GHNPETWTLVFEVMDITLEKGFGNA CCCCCEEEEEEEEEEHHEECCCCCC >Mature Secondary Structure SVFDPKQVSVLLNGTQIKDWADGTDVIDAKHNADAGAYTIGASGTGVFVANADRSGTLT CCCCCCEEEEEECCCEECCCCCCCCEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEE LKIKQHSADNAFLSRRLAQQRGAIQSFTPFTLDIRDLLNQDVVTATQGYFTPPPGFTRGA EEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCCCCEEECCCCCCCCCCCCCCC GHNPETWTLVFEVMDITLEKGFGNA CCCCCEEEEEEEEEEHHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA