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The map label for this gene is yumC

Identifier: 255767736

GI number: 255767736

Start: 3301586

End: 3302584

Strand: Direct

Name: yumC

Synonym: BSU32110

Alternate gene names: 255767736

Gene position: 3301586-3302584 (Clockwise)

Preceding gene: 16080259

Following gene: 255767737

Centisome position: 78.32

GC content: 47.45

Gene sequence:

>999_bases
ATGCGAGAGGATACAAAGGTTTATGATATTACAATTATAGGCGGGGGACCGGTCGGCTTATTCACCGCTTTTTACGGCGG
GATGAGACAGGCAAGCGTCAAAATTATCGAAAGCCTGCCTCAGCTCGGCGGACAGCTTAGCGCCCTATACCCTGAGAAGT
ATATATATGATGTAGCGGGATTCCCGAAAATCCGCGCGCAAGAGCTTATCAATAACCTAAAAGAGCAAATGGCGAAATTC
GACCAAACCATTTGTCTGGAGCAAGCGGTTGAATCTGTTGAGAAACAAGCGGACGGCGTGTTTAAGCTTGTAACAAATGA
AGAAACCCACTACTCTAAAACGGTCATCATAACTGCAGGAAACGGCGCATTCAAACCGAGAAAGCTGGAACTTGAAAATG
CCGAGCAGTATGAAGGCAAAAACCTCCATTACTTCGTTGATGATCTGCAAAAATTCGCCGGCAGACGCGTTGCGATCCTT
GGCGGTGGAGATTCCGCGGTTGACTGGGCGCTTATGCTTGAGCCAATCGCAAAAGAAGTATCGATCATTCACCGCCGCGA
CAAGTTCCGAGCGCACGAGCACAGTGTGGAAAACCTTCATGCGTCGAAGGTTAATGTCCTGACACCATTCGTCCCTGCGG
AGCTGATCGGCGAAGACAAAATCGAACAGCTAGTGCTTGAAGAAGTGAAAGGCGACCGCAAAGAGATTTTAGAAATTGAT
GACTTAATCGTCAACTACGGTTTCGTTTCATCTCTTGGACCGATCAAAAACTGGGGCCTGGACATCGAGAAAAATTCCAT
TGTCGTGAAATCAACAATGGAAACAAATATCGAAGGCTTCTTTGCAGCAGGTGACATTTGTACATACGAAGGAAAAGTCA
ACCTGATTGCCAGCGGCTTCGGCGAGGCACCGACAGCAGTGAACAACGCCAAGGCTTACATGGACCCGAAAGCCCGCGTA
CAGCCTCTTCACTCAACAAGTCTTTTTGAAAATAAATAA

Upstream 100 bases:

>100_bases
TGGGCACGTTAGATCCTTACGATTTTTTCTGCTGACTCGTCAATTTGAACGGCAATATGGTATAATTAATAACAATTTTC
ATTTAGGAGGCAATTTTCGT

Downstream 100 bases:

>100_bases
TAAAAAAAGGAGCTTGTGTCTGCGACACAGCTCCTTTTTTATTTGAAGATATTTATATAATTCAATGCAGTTCCTACAAC
CAGCGCAATCACAAGGGCTG

Product: ferredoxin-NADP+ reductase

Products: NA

Alternate protein names: FNR 2; Fd-NADP+ reductase 2

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKF
DQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAIL
GGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEID
DLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMDPKARV
QPLHSTSLFENK

Sequences:

>Translated_332_residues
MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKF
DQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAIL
GGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEID
DLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMDPKARV
QPLHSTSLFENK
>Mature_332_residues
MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKF
DQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAIL
GGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEID
DLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMDPKARV
QPLHSTSLFENK

Specific function: Unknown

COG id: COG0492

COG function: function code O; Thioredoxin reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ferredoxin--NADP reductase type 2 family

Homologues:

Organism=Escherichia coli, GI1787114, Length=324, Percent_Identity=27.4691358024691, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081763, Length=272, Percent_Identity=29.0441176470588, Blast_Score=72, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6321898, Length=310, Percent_Identity=27.741935483871, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6320560, Length=308, Percent_Identity=26.6233766233766, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): FENR2_BACSU (O05268)

Other databases:

- EMBL:   Z93939
- EMBL:   AL009126
- PIR:   B70015
- RefSeq:   NP_391091.2
- HSSP:   P0A9P4
- ProteinModelPortal:   O05268
- SMR:   O05268
- EnsemblBacteria:   EBBACT00000002034
- GeneID:   936577
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU32110
- NMPDR:   fig|224308.1.peg.3217
- GenoList:   BSU32110
- GeneTree:   EBGT00050000000432
- HOGENOM:   HBG669726
- ProtClustDB:   CLSK2460953
- BioCyc:   BSUB:BSU32110-MONOMER
- HAMAP:   MF_01685
- InterPro:   IPR013027
- InterPro:   IPR022890
- InterPro:   IPR001327
- InterPro:   IPR000103
- PRINTS:   PR00368
- PRINTS:   PR00469

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2

EC number: =1.18.1.2

Molecular weight: Translated: 36841; Mature: 36841

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: BINDING 37-37 BINDING 45-45 BINDING 50-50 BINDING 90-90 BINDING 124-124 BINDING 285-285 BINDING 326-326

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAG
CCCCCEEEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCCHHHEEECCC
FPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECC
NGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEV
CCCCCCCEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
SIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEID
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCHHHHHHHHHHHHCCCHHHHHHHH
DLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKVNLIASGF
HHHHHCCHHHCCCCHHHCCCCCCCCCEEEEEEHHCCCCEEEEECCEEEECCCEEEEECCC
GEAPTAVNNAKAYMDPKARVQPLHSTSLFENK
CCCCCCCCCCHHHCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAG
CCCCCEEEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCCHHHEEECCC
FPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECC
NGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEV
CCCCCCCEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
SIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEID
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCHHHHHHHHHHHHCCCHHHHHHHH
DLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKVNLIASGF
HHHHHCCHHHCCCCHHHCCCCCCCCCEEEEEEHHCCCCEEEEECCEEEECCCEEEEECCC
GEAPTAVNNAKAYMDPKARVQPLHSTSLFENK
CCCCCCCCCCHHHCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377